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DNAhel-1

Euk-Vir

Spodoptera_frugiperda_granulovirus

DNAhel-1__YP_009121868__Spodoptera_frugiperda_granulovirus__307454

Identity

Accession:: YP_009121868 ↗
Protein ID:: DNAhel-1
Kingdom:: euk

Quality

78.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Spodoptera_frugiperda_granulovirus

TaxID: 307454

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-145

PDB

Domain cluster: rep: P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335__D21-65_78-129_154-167

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	62.4	2.50e-17	89.4%	8.4%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k13X00	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.59	36.0	4.05e-01	100.0%	80.6%
2k2dA00	2.20.28.10	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 ›	0.53	20.0	3.16e-01	79.4%	95.7%
2qyxB01	3.30.70.1360	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like	0.51	35.0	3.87e-01	96.5%	89.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3258706	812.1.1.0 ↗	a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain	0.60	43.0	4.38e-01	73.8%	100.0%
3397134	379.1.1.0 ↗	few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors	0.53	20.0	2.97e-01	86.5%	84.0%
3179413	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.51	38.0	2.90e-01	75.9%	87.6%

D2 high residues 164-260

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4njcA00	3.10.20.730	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like	0.56	32.0	3.99e-01	85.6%	91.7%
2qsdA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	35.0	4.03e-01	99.0%	98.5%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3413240	3115.1.1.3 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › NRF	0.61	46.0	3.87e-01	79.4%	100.0%
3411474	3115.1.1.3 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › NRF	0.60	46.0	3.96e-01	82.5%	95.6%
4954241	4114.1.1.1 ↗	a+b two layers › PHP14-like › PHP14-like › PHP14-like › PP_kinase	0.51	44.0	3.57e-01	99.0%	94.4%

D3 high residues 295-453

PDB

Domain cluster: rep: DNA-helicase-2__YP_009182280__Diatraea_saccharalis_granulovirus__1675862__D269-385

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	45.3	3.70e-12	98.1%	10.9%

D4 high residues 1052-1161

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	55.9	2.30e-15	95.5%	8.7%

D5 medium residues 494-547

PDB

D6 medium residues 548-603_748-830

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	66.0	2.10e-18	66.2%	6.7%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2lm9A00	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	29.0	3.52e-01	94.2%	71.9%
5domA00	1.10.110.10	Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins	0.56	29.0	3.52e-01	98.6%	76.7%
2itbB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.53	40.0	3.57e-01	78.4%	92.9%
2qgnA02	1.10.287.890	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain	0.53	30.0	3.77e-01	83.5%	93.9%
3edvB01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	32.0	3.28e-01	96.4%	61.8%
2bdeA03	1.20.58.1160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	29.0	3.82e-01	90.6%	100.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3574626	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.51	30.0	3.07e-01	98.6%	58.6%
4941676	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.50	31.0	2.86e-01	97.8%	48.0%

D7 medium residues 604-747

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6fmhB01	1.10.3160.10	Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1	0.56	45.0	4.25e-01	84.7%	84.3%
2pmiB00	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.54	40.0	3.57e-01	79.2%	71.4%
1f5qB02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.53	34.0	3.51e-01	74.3%	68.1%
5bn3A04	1.10.1140.10	Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3	0.52	36.0	3.70e-01	71.5%	93.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4946740	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.57	39.0	3.53e-01	70.8%	90.2%
3726235	5069.1.1.7 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561	0.56	42.0	3.58e-01	77.1%	88.0%
4571060	3291.1.1.207 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF445	0.53	27.0	2.82e-01	83.3%	50.0%
5080354	1076.1.1.0 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related	0.52	38.0	3.23e-01	76.4%	91.7%

D8 medium residues 831-852_992-1051

PDB

Domain cluster: rep: helicase-1__YP_006908593__Epinotia_aporema_granulovirus__166056__D761-777_917-967

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	68.0	5.20e-19	78.0%	4.7%