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DNAlig
Euk-VirTomelloso_virus
DNAlig__YP_009553459__Tomelloso_virus__2053981
Identity
- Accession:
- YP_009553459 ↗
- Protein ID:
- DNAlig
- Kingdom:
- euk
Quality
73.7
mean pLDDT
Cluster
View cluster (52 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 253-340
Domain cluster:
rep: MK256384.1__QBA85097.1__X__00002__D37-130
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6nhxA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 73.0 | 6.59e-01 | 100.0% | 88.8% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 53.0 | 6.07e-01 | 100.0% | 96.9% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 35.0 | 4.08e-01 | 100.0% | 58.5% |
| 3l2pA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 69.0 | 6.19e-01 | 98.9% | 80.8% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 51.0 | 5.59e-01 | 100.0% | 89.0% |
| 1a0iA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 64.0 | 6.16e-01 | 100.0% | 98.0% |
| 5zg8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 53.0 | 5.06e-01 | 100.0% | 77.5% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 58.0 | 5.12e-01 | 100.0% | 80.3% |
| 2asbA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 48.0 | 5.11e-01 | 96.6% | 96.0% |
| 4up7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 52.0 | 4.39e-01 | 100.0% | 52.6% |
| 1mo9A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.63 | 33.0 | 2.86e-01 | 100.0% | 31.1% |
| 6l4qB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 53.0 | 4.59e-01 | 100.0% | 60.7% |
| 4l5tB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 47.0 | 4.72e-01 | 100.0% | 81.3% |
| 3ntkB01 | 2.40.50.790 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 48.0 | 4.88e-01 | 100.0% | 87.2% |
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.60 | 33.0 | 3.08e-01 | 100.0% | 43.4% |
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 51.0 | 4.71e-01 | 100.0% | 76.6% |
| 1o7iB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 47.0 | 4.35e-01 | 100.0% | 71.1% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.56 | 31.0 | 3.50e-01 | 70.5% | 70.1% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 44.0 | 4.19e-01 | 87.5% | 100.0% |
| 3lzwA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 30.0 | 2.75e-01 | 100.0% | 37.0% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.54 | 36.0 | 3.41e-01 | 75.0% | 54.0% |
| 4joiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 47.0 | 4.06e-01 | 100.0% | 78.0% |
| 2d9xA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 37.0 | 3.44e-01 | 72.7% | 61.8% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.53 | 35.0 | 3.52e-01 | 72.7% | 66.7% |
| 1vbiA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.52 | 41.0 | 3.04e-01 | 84.1% | 72.6% |
| 1h10A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 37.0 | 3.40e-01 | 73.9% | 60.7% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 37.0 | 3.48e-01 | 75.0% | 96.4% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.51 | 32.0 | 3.24e-01 | 79.5% | 60.9% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992393 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.85 | 80.0 | 6.90e-01 | 100.0% | 85.2% |
| 3386087 | 2.1.1.65 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 | 0.85 | 71.0 | 7.42e-01 | 100.0% | 96.2% |
| 5076594 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.85 | 77.0 | 6.79e-01 | 97.7% | 83.2% |
| 3968581 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.83 | 76.0 | 6.73e-01 | 100.0% | 88.8% |
| 3621122 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.82 | 77.0 | 6.54e-01 | 100.0% | 83.0% |
| 4947393 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.82 | 74.0 | 6.75e-01 | 97.7% | 89.6% |
| 4001812 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 73.0 | 6.20e-01 | 100.0% | 80.7% |
| 4455042 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.80 | 73.0 | 6.19e-01 | 100.0% | 75.0% |
| 4645509 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 70.0 | 7.16e-01 | 98.9% | 97.6% |
| 1170324 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.77 | 70.0 | 6.42e-01 | 98.9% | 89.3% |
| 5050610 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 57.0 | 6.25e-01 | 98.9% | 98.6% |
| 3944434 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 67.0 | 6.59e-01 | 97.7% | 88.4% |
| 3467905 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 44.0 | 5.36e-01 | 76.1% | 100.0% |
| 3602392 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.70 | 48.0 | 5.41e-01 | 100.0% | 95.4% |
| 3212560 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 51.0 | 5.54e-01 | 100.0% | 97.1% |
| 4928221 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.69 | 52.0 | 4.65e-01 | 100.0% | 56.5% |
| 3506791 | 2.1.1.69 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 | 0.68 | 55.0 | 4.68e-01 | 100.0% | 53.8% |
| 3227986 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 52.0 | 5.39e-01 | 100.0% | 92.5% |
| 3959837 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 54.0 | 5.50e-01 | 100.0% | 95.3% |
| 5012548 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.62 | 50.0 | 4.87e-01 | 100.0% | 79.0% |
| 3727607 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.61 | 52.0 | 4.44e-01 | 100.0% | 57.3% |
| 5021659 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.60 | 53.0 | 5.34e-01 | 98.9% | 98.9% |
| 3689299 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 52.0 | 4.85e-01 | 100.0% | 77.3% |
| 3310707 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.59 | 46.0 | 4.10e-01 | 100.0% | 57.7% |
| 3571716 | 2.1.1.188 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 | 0.58 | 50.0 | 5.04e-01 | 100.0% | 94.4% |
| 5037694 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.58 | 50.0 | 4.82e-01 | 100.0% | 84.0% |
| 4027863 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.58 | 51.0 | 4.50e-01 | 100.0% | 72.3% |
| 3204926 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.56 | 31.0 | 3.37e-01 | 71.6% | 65.7% |
| 3485854 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.55 | 50.0 | 4.14e-01 | 100.0% | 57.4% |
| 1489902 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 44.0 | 4.19e-01 | 87.5% | 100.0% |
| 3770082 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.55 | 48.0 | 3.86e-01 | 100.0% | 73.3% |
| 3299580 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 31.0 | 3.47e-01 | 78.4% | 73.8% |
| 3577361 | 2.1.1.215 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_1st | 0.54 | 45.0 | 4.37e-01 | 96.6% | 81.0% |
| 3889109 | 5.1.3.135 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 | 0.53 | 36.0 | 2.54e-01 | 71.6% | 76.2% |
| 3225583 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 36.0 | 3.22e-01 | 100.0% | 47.7% |
| 4932458 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 35.0 | 2.52e-01 | 70.5% | 30.8% |
| 3923987 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.50 | 35.0 | 2.55e-01 | 75.0% | 99.3% |
D2
medium
residues 66-87_203-252
Domain cluster:
rep: hypothetical_protein_IM014_gp134__YP_009927224__African_swine_fever_virus__10497__D118-152_269-319
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01068.27 best | DNA_ligase_A_M | 32.8 | 8.20e-08 | 88.9% | 24.0% |
D3
medium
residues 88-202
Domain cluster:
rep: ATP-dependent_DNA_ligase__YP_009094561__Melbournevirus__1560514__D164-283
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01068.27 best | DNA_ligase_A_M | 47.9 | 1.80e-12 | 99.1% | 61.3% |