DNApol_B

Euk-Vir

Tomelloso_virus

DNApol_B__YP_009553377__Tomelloso_virus__2053981

Identity

67.8 mean pLDDT

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Tomelloso_virus

TaxID: 2053981

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 217-448

PDB

Domain cluster: rep: DNAPol__YP_009116659__Tipula_oleracea_nudivirus__1546257__D190-428

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03104.26 best	DNA_pol_B_exo1	31.5	1.70e-07	71.1%	45.0%

D2 high residues 997-1171

PDB

D3 medium residues 18-81_160-214

PDB

Domain cluster: rep: dnapol_B__YP_002321312__Oryctes_rhinoceros_nudivirus__92521__D11-75_194-214

D4 medium residues 556-585_937-996

PDB

D5 medium residues 586-665

PDB

Domain cluster: rep: DNA_polymerase__YP_009051843__Penaeus_monodon_nudivirus__1529056__D542-576_596-632

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gsaA03	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.60	45.0	4.89e-01	96.2%	98.5%
5zctA02	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.57	43.0	4.69e-01	100.0%	98.5%
6cngA02	2.20.28.50	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain	0.55	28.0	3.63e-01	70.0%	100.0%
5kfzA04	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.53	45.0	3.98e-01	97.5%	92.7%
1tr0A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	35.0	3.29e-01	70.0%	97.2%
2pvpA03	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.52	39.0	4.21e-01	96.2%	100.0%
3rrkA01	3.30.70.2170	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	31.0	3.28e-01	97.5%	66.7%
3ekiA01	3.40.190.180	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I	0.51	41.0	3.21e-01	88.7%	93.2%
3kalB05	3.30.1490.50	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain	0.50	34.0	3.69e-01	92.5%	94.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3407573	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.58	50.0	4.46e-01	100.0%	92.5%
5055787	304.113.1.0 ↗	a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain	0.51	36.0	3.50e-01	100.0%	65.6%

D6 medium residues 697-713_838-936

PDB

Domain cluster: representative

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4027404	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.64	35.0	3.91e-01	86.2%	66.3%
4954786	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.60	37.0	4.21e-01	71.6%	83.5%
5053794	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.56	41.0	3.99e-01	75.9%	95.4%
3937452	601.2.1.5 ↗	alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr	0.52	40.0	3.59e-01	81.0%	62.5%
3788340	3615.1.1.0 ↗	alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain	0.52	41.0	3.44e-01	83.6%	70.8%