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DQ003640.1__AAY53153.1__X__00048
Bact-VirDQ003640.1__AAY53153.1__X__00048
Identity
- Accession:
- DQ003640 ↗
- Kingdom:
- phage
Quality
84.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-53
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 58.0 | 3.89e-01 | 75.5% | 85.1% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 59.0 | 4.68e-01 | 81.1% | 75.5% |
| 6vq6H01 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 59.0 | 3.88e-01 | 81.1% | 86.8% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 58.0 | 4.54e-01 | 81.1% | 73.4% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.68 | 34.0 | 2.98e-01 | 90.6% | 29.3% |
| 2g0iA00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.66 | 52.0 | 4.12e-01 | 86.8% | 74.8% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.65 | 49.0 | 3.12e-01 | 84.9% | 41.0% |
| 5umbA02 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.64 | 48.0 | 4.32e-01 | 92.5% | 58.7% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.63 | 54.0 | 4.62e-01 | 94.3% | 95.2% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.62 | 45.0 | 3.79e-01 | 79.2% | 76.8% |
| 4e11A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 51.0 | 3.19e-01 | 92.5% | 19.3% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.61 | 50.0 | 3.54e-01 | 88.7% | 30.8% |
| 2rffA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 51.0 | 4.00e-01 | 92.5% | 90.1% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.61 | 45.0 | 3.65e-01 | 81.1% | 90.4% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.60 | 50.0 | 4.14e-01 | 92.5% | 76.6% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.60 | 42.0 | 2.81e-01 | 77.4% | 23.9% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 50.0 | 3.92e-01 | 94.3% | 84.0% |
| 2nq2D00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 41.0 | 2.72e-01 | 84.9% | 16.1% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 48.0 | 3.80e-01 | 92.5% | 43.8% |
| 2abyA00 | 3.30.70.1980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 | 0.58 | 43.0 | 3.36e-01 | 81.1% | 77.0% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 39.0 | 3.19e-01 | 71.7% | 86.0% |
| 1ti2B01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 3.25e-01 | 81.1% | 42.1% |
| 2itmB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 50.0 | 3.29e-01 | 100.0% | 26.1% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.56 | 44.0 | 3.21e-01 | 86.8% | 85.2% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.56 | 46.0 | 3.54e-01 | 96.2% | 69.4% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.56 | 48.0 | 3.52e-01 | 94.3% | 56.3% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 43.0 | 3.13e-01 | 90.6% | 43.4% |
| 2p35A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 40.0 | 2.87e-01 | 81.1% | 44.3% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.54 | 45.0 | 3.72e-01 | 92.5% | 54.7% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 44.0 | 3.01e-01 | 94.3% | 95.7% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 45.0 | 3.04e-01 | 92.5% | 49.5% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 43.0 | 3.49e-01 | 88.7% | 64.7% |
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 39.0 | 3.39e-01 | 90.6% | 52.6% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 44.0 | 2.74e-01 | 100.0% | 93.6% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.30e-01 | 86.8% | 46.7% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.09e-01 | 75.5% | 41.3% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 40.0 | 2.88e-01 | 88.7% | 49.5% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.04e-01 | 77.4% | 85.6% |
| 3r0xA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 43.0 | 2.70e-01 | 94.3% | 81.5% |
| 3g8qA02 | 3.30.70.1940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.41e-01 | 88.7% | 55.0% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.51 | 42.0 | 2.74e-01 | 92.5% | 21.8% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1207585 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.76 | 52.0 | 4.52e-01 | 71.7% | 51.9% |
| 5026457 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.75 | 57.0 | 3.75e-01 | 81.1% | 56.2% |
| 3512028 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.73 | 55.0 | 3.46e-01 | 81.1% | 25.6% |
| 1548765 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.70 | 51.0 | 4.15e-01 | 77.4% | 40.2% |
| 3587666 | 330.1.1.11 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF1071 | 0.70 | 40.0 | 2.90e-01 | 88.7% | 21.5% |
| 3208120 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.70 | 62.0 | 4.45e-01 | 100.0% | 83.2% |
| 3443252 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.70 | 53.0 | 5.64e-01 | 90.6% | 97.8% |
| 4000297 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.69 | 51.0 | 3.16e-01 | 83.0% | 61.5% |
| 3716228 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.66 | 54.0 | 3.98e-01 | 90.6% | 37.9% |
| 3994884 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.65 | 51.0 | 3.21e-01 | 86.8% | 79.0% |
| 1247620 | 101.1.1.72 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GP3_package | 0.65 | 45.0 | 3.32e-01 | 92.5% | 28.1% |
| 3791945 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.64 | 54.0 | 3.57e-01 | 96.2% | 60.9% |
| 3408734 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.63 | 51.0 | 3.23e-01 | 96.2% | 75.5% |
| 4408503 | 192.2.1.43 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N | 0.63 | 47.0 | 3.65e-01 | 92.5% | 34.1% |
| 4588825 | 589.1.1.20 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › TraD_N | 0.62 | 46.0 | 3.66e-01 | 92.5% | 35.4% |
| 5000798 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.61 | 45.0 | 3.15e-01 | 77.4% | 71.4% |
| 3333341 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.61 | 47.0 | 3.22e-01 | 92.5% | 23.0% |
| 3369483 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.61 | 51.0 | 3.24e-01 | 92.5% | 21.2% |
| 3803650 | 109.4.1.1335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif | 0.60 | 51.0 | 2.86e-01 | 94.3% | 10.7% |
| 3217385 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 40.0 | 3.47e-01 | 79.2% | 43.5% |
| 3340500 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.59 | 49.0 | 3.09e-01 | 94.3% | 60.6% |
| 5034119 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 44.0 | 3.06e-01 | 84.9% | 71.0% |
| 4668983 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.58 | 45.0 | 3.23e-01 | 86.8% | 81.2% |
| 4056919 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.57 | 48.0 | 3.17e-01 | 92.5% | 49.8% |
| 3586696 | 223.1.1.101 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 | 0.57 | 45.0 | 2.93e-01 | 90.6% | 17.8% |
| 3798829 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 47.0 | 3.13e-01 | 96.2% | 51.1% |
| 3696798 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.57 | 44.0 | 2.86e-01 | 84.9% | 27.5% |
| 3641285 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.56 | 45.0 | 2.57e-01 | 88.7% | 10.4% |
| 2901051 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 46.0 | 3.95e-01 | 92.5% | 56.8% |
| 3447761 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.56 | 45.0 | 3.22e-01 | 90.6% | 31.5% |
| 4009799 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.56 | 50.0 | 3.94e-01 | 98.1% | 81.0% |
| 3366822 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.56 | 45.0 | 2.81e-01 | 90.6% | 17.6% |
| 3810357 | 109.4.1.1371 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif | 0.55 | 45.0 | 2.70e-01 | 90.6% | 13.9% |
| 3420078 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.55 | 45.0 | 2.51e-01 | 90.6% | 8.0% |
| 3318043 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.54 | 43.0 | 2.45e-01 | 88.7% | 8.1% |
| 4991990 | 878.1.1.0 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 | 0.54 | 43.0 | 3.52e-01 | 88.7% | 96.0% |
| 3461432 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.54 | 43.0 | 3.22e-01 | 90.6% | 36.4% |
| 3442448 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.54 | 43.0 | 2.49e-01 | 90.6% | 8.9% |
| 3327782 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.54 | 44.0 | 2.43e-01 | 90.6% | 6.5% |
| 4330210 | 327.6.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin | 0.53 | 37.0 | 2.44e-01 | 77.4% | 14.1% |
| 3442732 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.53 | 42.0 | 3.26e-01 | 90.6% | 40.0% |
| 3448062 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.53 | 42.0 | 2.50e-01 | 90.6% | 10.7% |
| 3346465 | 109.4.1.1371 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif | 0.53 | 42.0 | 2.46e-01 | 90.6% | 10.3% |
| 3333880 | 109.4.1.1331 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif | 0.53 | 42.0 | 2.55e-01 | 86.8% | 13.9% |
| 3821986 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.52 | 43.0 | 2.76e-01 | 94.3% | 29.1% |
| 3266052 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 39.0 | 3.00e-01 | 86.8% | 41.4% |
| 3680991 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.52 | 45.0 | 2.78e-01 | 100.0% | 75.0% |
| 3468311 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.51 | 39.0 | 2.41e-01 | 88.7% | 14.0% |
| 4899007 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.51 | 40.0 | 3.66e-01 | 88.7% | 68.1% |
| 4651639 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.51 | 45.0 | 2.69e-01 | 100.0% | 62.8% |
| 5051542 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 41.0 | 2.78e-01 | 88.7% | 76.8% |
| 4564327 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.50 | 42.0 | 3.69e-01 | 96.2% | 72.3% |
D2
medium
residues 54-113
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j78A05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.81 | 59.0 | 5.97e-01 | 78.3% | 76.7% |
| 5u4nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.76 | 58.0 | 3.60e-01 | 85.0% | 26.6% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.74 | 57.0 | 4.89e-01 | 83.3% | 53.8% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.74 | 56.0 | 5.15e-01 | 83.3% | 64.1% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 37.0 | 3.92e-01 | 73.3% | 53.7% |
| 3rfwA02 | 6.10.140.970 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 60.0 | 5.37e-01 | 95.0% | 65.1% |
| 3b0bC02 | 6.10.130.30 | Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.73 | 50.0 | 5.71e-01 | 76.7% | 100.0% |
| 3t38A01 | 1.10.8.1060 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain | 0.72 | 49.0 | 4.63e-01 | 88.3% | 59.2% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 55.0 | 3.59e-01 | 85.0% | 36.4% |
| 6ofuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 53.0 | 3.47e-01 | 80.0% | 35.1% |
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.71 | 61.0 | 4.59e-01 | 95.0% | 39.3% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.70 | 51.0 | 4.20e-01 | 85.0% | 43.1% |
| 4di1C02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.70 | 46.0 | 5.47e-01 | 73.3% | 100.0% |
| 3pm6A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 54.0 | 3.46e-01 | 85.0% | 24.0% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 60.0 | 4.96e-01 | 95.0% | 88.3% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 53.0 | 5.42e-01 | 88.3% | 91.2% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.68 | 48.0 | 4.23e-01 | 75.0% | 53.3% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.68 | 55.0 | 4.42e-01 | 95.0% | 95.4% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.67 | 46.0 | 4.52e-01 | 71.7% | 71.9% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.67 | 51.0 | 4.38e-01 | 83.3% | 77.3% |
| 4jfcA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.66 | 41.0 | 4.30e-01 | 95.0% | 67.9% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 47.0 | 3.50e-01 | 80.0% | 28.5% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.66 | 50.0 | 4.33e-01 | 86.7% | 51.0% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.65 | 53.0 | 5.20e-01 | 96.7% | 82.8% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 52.0 | 5.36e-01 | 95.0% | 94.6% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.64 | 50.0 | 3.78e-01 | 90.0% | 34.0% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 55.0 | 4.71e-01 | 100.0% | 61.5% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.60 | 47.0 | 4.67e-01 | 91.7% | 80.3% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.60 | 52.0 | 4.06e-01 | 98.3% | 45.9% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 51.0 | 3.94e-01 | 100.0% | 55.6% |
| 2nrkA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 43.0 | 3.20e-01 | 91.7% | 81.8% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4192507 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.84 | 73.0 | 6.58e-01 | 95.0% | 71.2% |
| 3724273 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.82 | 55.0 | 4.87e-01 | 75.0% | 49.4% |
| 3776400 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.81 | 55.0 | 4.91e-01 | 70.0% | 53.8% |
| 3260418 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.78 | 62.0 | 6.08e-01 | 86.7% | 84.6% |
| 3597348 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.78 | 62.0 | 3.94e-01 | 88.3% | 18.7% |
| 4648753 | 605.1.1.278 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Attractin | 0.77 | 68.0 | 6.86e-01 | 96.7% | 98.3% |
| 4954172 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.77 | 63.0 | 4.35e-01 | 91.7% | 27.7% |
| 4329615 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.76 | 54.0 | 5.07e-01 | 75.0% | 62.9% |
| 3420477 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 54.0 | 4.17e-01 | 75.0% | 36.9% |
| 5016489 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.76 | 62.0 | 4.31e-01 | 91.7% | 27.5% |
| 1148184 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.74 | 53.0 | 4.37e-01 | 83.3% | 42.6% |
| 171404 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.74 | 56.0 | 5.15e-01 | 83.3% | 64.1% |
| 4953068 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.73 | 60.0 | 4.20e-01 | 91.7% | 28.2% |
| 4946087 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.72 | 55.0 | 4.36e-01 | 83.3% | 40.8% |
| 5000270 | 3646.1.1.0 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters | 0.72 | 60.0 | 4.09e-01 | 95.0% | 25.5% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.71 | 52.0 | 5.20e-01 | 88.3% | 76.7% |
| 4979163 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.69 | 58.0 | 4.25e-01 | 91.7% | 38.1% |
| 5058468 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.69 | 56.0 | 5.26e-01 | 91.7% | 76.0% |
| 3242033 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.68 | 54.0 | 4.66e-01 | 90.0% | 56.0% |
| 3402099 | 5043.2.1.5 ↗ | extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H | 0.68 | 54.0 | 5.05e-01 | 88.3% | 69.3% |
| 4242465 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.68 | 57.0 | 4.92e-01 | 95.0% | 62.1% |
| 4990523 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.68 | 47.0 | 4.11e-01 | 80.0% | 46.3% |
| 3209368 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 56.0 | 3.47e-01 | 93.3% | 53.9% |
| 3434456 | 3470.1.1.0 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain | 0.67 | 47.0 | 5.08e-01 | 75.0% | 100.0% |
| 4329038 | 375.1.9.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Insulin | 0.67 | 49.0 | 4.28e-01 | 96.7% | 52.2% |
| 3809086 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.67 | 51.0 | 4.65e-01 | 88.3% | 61.2% |
| 4958277 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.66 | 55.0 | 3.94e-01 | 96.7% | 30.8% |
| 3613914 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.65 | 59.0 | 5.39e-01 | 96.7% | 78.7% |
| 3506294 | 3281.1.1.0 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related | 0.64 | 44.0 | 5.01e-01 | 75.0% | 97.8% |
| 185221 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.64 | 45.0 | 4.36e-01 | 75.0% | 65.7% |
| 4632127 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 53.0 | 4.77e-01 | 98.3% | 67.1% |
| 5052428 | 605.6.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like | 0.60 | 55.0 | 4.83e-01 | 98.3% | 75.0% |
| 3699091 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.59 | 46.0 | 2.81e-01 | 83.3% | 20.0% |