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DQ003641.1__AAY53236.1__X__00051

Bact-Vir

DQ003641.1__AAY53236.1__X__00051

Identity

Accession:
DQ003641 ↗
Kingdom:
phage

Quality

50.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_P35

TaxID: 330398

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-71
PDB
Domain cluster: rep: MG592441.1__AUR84811.1__NVP1063O_144__00144__D51-98
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 43.0 4.52e-01 78.7% 100.0%
1fviA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 38.0 3.52e-01 85.2% 53.2%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 31.0 3.40e-01 75.4% 66.7%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 41.0 4.32e-01 78.7% 98.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.56 38.0 3.78e-01 86.9% 66.7%
5jouA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 31.0 2.86e-01 75.4% 41.8%
2lcqA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 32.0 3.78e-01 86.9% 92.1%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.54 36.0 3.90e-01 85.2% 87.8%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 35.0 4.04e-01 77.0% 97.8%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 35.0 3.09e-01 73.8% 87.6%
2oktA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.51 38.0 2.81e-01 86.9% 98.5%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 43.0 3.84e-01 100.0% 87.0%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.50 33.0 3.34e-01 91.8% 67.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4519945 101.1.14.4 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.79 59.0 6.20e-01 80.3% 100.0%
3058113 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.74 54.0 5.74e-01 82.0% 90.4%
4961283 101.1.2.935 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.69 46.0 3.84e-01 70.5% 77.1%
5036380 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.62 46.0 4.03e-01 83.6% 94.0%
4583179 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 44.0 4.57e-01 78.7% 100.0%
None — 0.60 32.0 3.73e-01 78.7% 73.3%
3217685 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.58 38.0 3.90e-01 85.2% 70.7%
5068907 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.50e-01 86.9% 97.8%
4008034 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.57 40.0 3.00e-01 77.0% 37.1%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.55 42.0 4.39e-01 82.0% 94.5%
4943977 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 33.0 3.93e-01 78.7% 97.5%
4268554 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.51 40.0 3.68e-01 86.9% 80.0%
4470809 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.73e-01 77.0% 98.3%
D2 medium residues 82-183
PDB
D3 medium residues 224-295
PDB