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DQ003642.1__AAY53270.1__X__00035
Bact-VirDQ003642.1__AAY53270.1__X__00035
Identity
- Accession:
- DQ003642 ↗
- Kingdom:
- phage
Quality
75.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-86_155-178
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.74 | 55.0 | 5.59e-01 | 76.9% | 88.6% |
| 4z85A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 49.0 | 4.03e-01 | 76.9% | 61.9% |
| 1uv7A00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.67 | 43.0 | 4.93e-01 | 76.9% | 92.1% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.65 | 30.0 | 4.24e-01 | 72.2% | 94.0% |
| 2zzeA04 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.62 | 45.0 | 4.75e-01 | 76.9% | 84.2% |
| 1nh2D02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.62 | 29.0 | 4.13e-01 | 71.3% | 97.9% |
| 3a35A02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 37.0 | 3.98e-01 | 73.1% | 68.5% |
| 1nvpD02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.62 | 28.0 | 4.05e-01 | 71.3% | 97.8% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.62 | 37.0 | 4.39e-01 | 72.2% | 90.1% |
| 1i8dA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 36.0 | 3.88e-01 | 72.2% | 68.5% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.60 | 45.0 | 4.50e-01 | 77.8% | 91.7% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.59 | 42.0 | 4.23e-01 | 73.1% | 79.8% |
| 2e1bA02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.59 | 43.0 | 4.13e-01 | 76.9% | 88.4% |
| 2iusD01 | 3.30.980.40 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.58 | 41.0 | 4.32e-01 | 100.0% | 80.6% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 26.0 | 3.25e-01 | 75.0% | 68.3% |
| 3aqoA02 | 3.30.1360.200 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 41.0 | 3.82e-01 | 75.0% | 85.1% |
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.58 | 43.0 | 3.88e-01 | 77.8% | 89.6% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.57 | 46.0 | 3.81e-01 | 86.1% | 79.4% |
| 1l3lA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.57 | 41.0 | 3.60e-01 | 75.9% | 81.2% |
| 5y2dA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 46.0 | 4.43e-01 | 91.7% | 77.5% |
| 4er8A00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.57 | 43.0 | 3.80e-01 | 100.0% | 53.3% |
| 3ci6B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 40.0 | 3.56e-01 | 74.1% | 79.4% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.56 | 40.0 | 4.10e-01 | 73.1% | 80.0% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 41.0 | 3.41e-01 | 77.8% | 61.5% |
| 3uiuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 39.0 | 4.09e-01 | 75.0% | 79.4% |
| 3i5tB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 35.0 | 3.10e-01 | 77.8% | 43.3% |
| 1vf7F01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.54 | 43.0 | 4.44e-01 | 87.0% | 91.2% |
| 3hcyA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 38.0 | 3.52e-01 | 75.9% | 86.9% |
| 3a8uX01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 33.0 | 2.95e-01 | 77.8% | 42.5% |
| 7pjjA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.53e-01 | 74.1% | 62.3% |
| 2qybA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 39.0 | 3.52e-01 | 80.6% | 90.7% |
| 2ej9A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 38.0 | 3.19e-01 | 77.8% | 74.5% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 3.88e-01 | 75.9% | 91.8% |
| 4o01D01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 39.0 | 3.26e-01 | 85.2% | 79.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3941539 | 1.1.13.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail | 0.84 | 61.0 | 6.27e-01 | 75.0% | 100.0% |
| 5081561 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.84 | 60.0 | 6.88e-01 | 76.9% | 98.8% |
| 3969448 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.83 | 60.0 | 6.09e-01 | 74.1% | 100.0% |
| 184986 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.75 | 55.0 | 5.27e-01 | 76.9% | 96.0% |
| 3963092 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 46.0 | 4.90e-01 | 76.9% | 75.8% |
| 5080958 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.68 | 42.0 | 4.88e-01 | 77.8% | 88.0% |
| 5083116 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.68 | 41.0 | 4.82e-01 | 77.8% | 86.7% |
| 4968594 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.67 | 42.0 | 4.87e-01 | 77.8% | 89.3% |
| 3972839 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.67 | 43.0 | 4.12e-01 | 77.8% | 56.0% |
| 4938919 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 30.0 | 3.74e-01 | 76.9% | 67.7% |
| 5077304 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.66 | 42.0 | 4.86e-01 | 77.8% | 90.7% |
| 4954563 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 49.0 | 5.39e-01 | 76.9% | 100.0% |
| 4682676 | 1.1.5.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head | 0.64 | 46.0 | 4.58e-01 | 75.9% | 86.1% |
| 5034013 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.64 | 40.0 | 4.65e-01 | 77.8% | 90.7% |
| 4981202 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.64 | 40.0 | 4.67e-01 | 77.8% | 90.7% |
| 5035742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 29.0 | 3.72e-01 | 76.9% | 75.0% |
| 5027191 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.62 | 37.0 | 4.44e-01 | 77.8% | 91.4% |
| 5062792 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.62 | 40.0 | 4.65e-01 | 77.8% | 94.7% |
| 5020258 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 44.0 | 4.34e-01 | 75.9% | 85.0% |
| 3386803 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.61 | 42.0 | 4.39e-01 | 71.3% | 80.0% |
| 3815852 | 60.1.1.10 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › PF28898 | 0.60 | 44.0 | 4.15e-01 | 77.8% | 100.0% |
| 119197 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.60 | 45.0 | 4.50e-01 | 77.8% | 91.7% |
| 3830342 | 1.1.7.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding | 0.60 | 37.0 | 3.77e-01 | 74.1% | 60.9% |
| 5026297 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.59 | 44.0 | 3.89e-01 | 77.8% | 89.7% |
| 5044389 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.58 | 24.0 | 3.47e-01 | 74.1% | 84.0% |
| 3169465 | 811.1.1.1 ↗ | a+b complex topology › Cell cycle regulatory proteins › Cell cycle regulatory proteins › Cell cycle regulatory proteins › CKS | 0.58 | 40.0 | 4.07e-01 | 72.2% | 87.3% |
| 5034617 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.57 | 41.0 | 4.43e-01 | 75.9% | 88.9% |
| 1111980 | 811.1.1.0 ↗ | a+b complex topology › Cell cycle regulatory proteins › Cell cycle regulatory proteins › Cell cycle regulatory proteins | 0.57 | 40.0 | 4.03e-01 | 72.2% | 89.7% |
| 4965879 | 881.1.1.44 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 | 0.56 | 41.0 | 3.52e-01 | 77.8% | 74.6% |
| 3259730 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.56 | 41.0 | 4.13e-01 | 76.9% | 84.5% |
| 3781406 | 811.1.1.1 ↗ | a+b complex topology › Cell cycle regulatory proteins › Cell cycle regulatory proteins › Cell cycle regulatory proteins › CKS | 0.55 | 39.0 | 4.10e-01 | 72.2% | 100.0% |
| 136963 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.55 | 41.0 | 3.72e-01 | 77.8% | 92.5% |
| 4028481 | 811.1.1.1 ↗ | a+b complex topology › Cell cycle regulatory proteins › Cell cycle regulatory proteins › Cell cycle regulatory proteins › CKS | 0.55 | 39.0 | 4.20e-01 | 75.9% | 88.9% |
| 4030175 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 41.0 | 2.90e-01 | 77.8% | 43.4% |
| 5045065 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.54 | 39.0 | 3.28e-01 | 75.0% | 70.8% |
| 3910541 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.53 | 42.0 | 3.98e-01 | 85.2% | 73.1% |
| 1878743 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 33.0 | 3.43e-01 | 77.8% | 68.0% |
| 4948115 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.52 | 42.0 | 3.07e-01 | 89.8% | 63.7% |
| 5036719 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.52 | 42.0 | 3.05e-01 | 89.8% | 63.7% |
| 5083199 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.51 | 38.0 | 3.58e-01 | 75.9% | 97.7% |
| 3948364 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 38.0 | 3.55e-01 | 77.8% | 90.4% |
| 4489725 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.51 | 37.0 | 3.65e-01 | 76.9% | 99.1% |
| 4628601 | 330.3.1.5 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › PF30110 | 0.50 | 32.0 | 3.43e-01 | 83.3% | 73.1% |
D2
high
residues 101-144