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DQ114220.1__AAZ93649.1__X__00013

Bact-Vir

DQ114220.1__AAZ93649.1__X__00013

Identity

Accession:
DQ114220 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-82
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.81 68.0 5.80e-01 100.0% 58.0%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 63.0 5.11e-01 100.0% 49.5%
1es2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.73 63.0 3.97e-01 98.2% 20.0%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 60.0 4.31e-01 94.5% 32.7%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 51.0 4.21e-01 94.5% 43.7%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 55.0 3.72e-01 100.0% 23.5%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 56.0 5.28e-01 100.0% 76.1%
1j7dA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.65 56.0 4.25e-01 100.0% 50.7%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.65 53.0 3.59e-01 89.1% 84.1%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 48.0 3.93e-01 100.0% 42.7%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.63 47.0 4.42e-01 89.1% 65.2%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 55.0 4.29e-01 98.2% 82.4%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 47.0 4.03e-01 96.4% 48.5%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.63 49.0 3.18e-01 85.5% 27.5%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 3.77e-01 87.3% 38.6%
1o6eA00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.63 45.0 2.97e-01 76.4% 96.4%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 50.0 4.10e-01 98.2% 46.5%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.60 49.0 3.55e-01 89.1% 31.8%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 4.02e-01 100.0% 45.9%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.60 52.0 3.99e-01 100.0% 50.0%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 50.0 3.95e-01 100.0% 80.8%
1k0rA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.60 37.0 3.10e-01 100.0% 34.3%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 37.0 3.02e-01 74.5% 30.6%
2k18A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 47.0 3.76e-01 94.5% 77.2%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 44.0 3.45e-01 100.0% 34.0%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.65e-01 100.0% 41.7%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 46.0 3.66e-01 94.5% 48.1%
6cngA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.58 47.0 3.77e-01 100.0% 96.1%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.53e-01 100.0% 39.8%
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 48.0 3.47e-01 100.0% 43.1%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 46.0 3.78e-01 98.2% 53.1%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.06e-01 100.0% 60.2%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 47.0 3.62e-01 100.0% 96.4%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 2.94e-01 100.0% 97.6%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 38.0 3.17e-01 78.2% 61.1%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.53 42.0 3.81e-01 89.1% 64.1%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.41e-01 96.4% 80.2%
1twfB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 43.0 3.15e-01 100.0% 83.1%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 37.0 3.15e-01 78.2% 49.5%
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.51 41.0 3.68e-01 94.5% 74.4%
1cjxA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 2.89e-01 83.6% 92.7%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.24e-01 83.6% 98.9%
2e50B02 3.30.1120.90 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein 0.50 40.0 3.18e-01 87.3% 52.3%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 40.0 3.65e-01 90.9% 96.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4011588 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.84 73.0 6.58e-01 100.0% 70.7%
3592742 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.84 71.0 5.95e-01 96.4% 56.7%
3995776 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.79 71.0 5.96e-01 100.0% 61.1%
3615641 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.78 66.0 5.75e-01 98.2% 62.4%
3281635 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.77 70.0 5.49e-01 100.0% 51.8%
5076192 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.77 46.0 4.14e-01 100.0% 45.9%
4121961 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.73 54.0 3.24e-01 81.8% 11.4%
3958242 885.1.1.0 a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain 0.72 46.0 3.71e-01 100.0% 36.0%
3492441 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 61.0 5.56e-01 100.0% 72.0%
3966083 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.71 53.0 4.23e-01 94.5% 39.1%
4957303 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.68 48.0 2.94e-01 87.3% 11.5%
3947082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 54.0 4.70e-01 92.7% 67.8%
3741882 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.66 51.0 3.18e-01 87.3% 89.4%
3827309 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.64 55.0 4.75e-01 100.0% 68.9%
3782891 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.64 47.0 2.83e-01 78.2% 14.6%
4938042 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.64 49.0 4.05e-01 89.1% 45.7%
3977405 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.62 52.0 4.38e-01 100.0% 57.0%
3531333 220.1.1.35 beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.62 48.0 3.47e-01 87.3% 29.7%
5031715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.44e-01 80.0% 77.8%
5051984 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 3.82e-01 94.5% 40.8%
3321360 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.61 48.0 4.44e-01 94.5% 66.7%
5047349 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 45.0 3.84e-01 81.8% 52.6%
3456692 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 50.0 4.96e-01 94.5% 88.1%
4144852 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.60 48.0 3.97e-01 100.0% 47.2%
3404845 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.60 47.0 3.99e-01 100.0% 50.5%
3588277 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.60 48.0 4.02e-01 100.0% 47.8%
7610 885.1.1.1 a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.60 37.0 3.05e-01 100.0% 32.7%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 45.0 4.56e-01 87.3% 100.0%
3477246 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.59 51.0 3.81e-01 98.2% 37.9%
3216933 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.59 48.0 4.22e-01 100.0% 86.3%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 50.0 4.33e-01 100.0% 75.6%
3274213 2485.1.1.55 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 0.58 50.0 3.70e-01 100.0% 61.9%
3515029 223.2.1.46 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.58 49.0 3.67e-01 100.0% 95.3%
3864513 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 3.87e-01 98.2% 42.4%
3629860 223.2.1.43 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_M 0.58 51.0 3.71e-01 100.0% 37.7%
4942627 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.57 48.0 3.63e-01 100.0% 38.7%
4987111 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.57 46.0 3.22e-01 94.5% 66.8%
3516854 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.56e-01 87.3% 52.2%
3931969 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.47e-01 89.1% 44.8%
3472532 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 3.64e-01 100.0% 51.0%
3589174 213.1.1.35 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG 0.56 41.0 3.52e-01 78.2% 54.1%
3227570 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.56 45.0 3.20e-01 98.2% 28.8%
4026435 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 42.0 3.40e-01 89.1% 52.0%
4768540 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.54 45.0 3.01e-01 100.0% 45.9%
3630687 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.17e-01 98.2% 32.7%
4933787 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.53 42.0 3.06e-01 90.9% 35.3%
4610901 4180.1.1.1 a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.53 43.0 3.82e-01 94.5% 75.3%
3572103 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.53 43.0 3.40e-01 100.0% 45.9%
4961598 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.52 41.0 3.11e-01 90.9% 39.3%
4990693 2.21.1.5 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.52 41.0 2.98e-01 90.9% 34.3%
4037529 4180.1.1.1 a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.52 41.0 3.58e-01 94.5% 67.4%
5025053 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.30e-01 100.0% 41.5%
3883155 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.50 44.0 3.24e-01 100.0% 72.0%
4401930 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.50 41.0 3.31e-01 100.0% 83.7%
4312097 295.1.1.15 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.50 39.0 2.90e-01 94.5% 53.1%