←Back to structures
DQ203855.1__ABA60016.1__X__00015
Bact-VirDQ203855.1__ABA60016.1__X__00015
Identity
- Accession:
- DQ203855 ↗
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Taxonomy
TaxID: 348137
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-22_35-72
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 55.0 | 5.21e-01 | 100.0% | 63.5% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 50.0 | 4.69e-01 | 100.0% | 60.6% |
| 2j3vA02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.72 | 56.0 | 3.76e-01 | 85.5% | 62.7% |
| 4aw8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.67 | 46.0 | 3.16e-01 | 70.9% | 28.0% |
| 4fk7A00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.67 | 50.0 | 3.46e-01 | 83.6% | 62.6% |
| 4h3sA02 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.67 | 57.0 | 4.53e-01 | 100.0% | 76.7% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.65 | 57.0 | 4.75e-01 | 100.0% | 77.9% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 54.0 | 4.91e-01 | 100.0% | 69.4% |
| 1dfuP00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.62 | 51.0 | 4.42e-01 | 100.0% | 72.3% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.60 | 51.0 | 3.81e-01 | 100.0% | 57.4% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 49.0 | 4.06e-01 | 100.0% | 51.0% |
| 3n77A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 49.0 | 3.79e-01 | 100.0% | 66.7% |
| 1sjyA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 50.0 | 3.73e-01 | 100.0% | 53.9% |
| 3qsjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 47.0 | 3.33e-01 | 100.0% | 68.0% |
| 1s04A00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.59 | 50.0 | 4.04e-01 | 96.4% | 84.5% |
| 3gqhA02 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.58 | 32.0 | 3.66e-01 | 89.1% | 72.5% |
| 5uayA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 51.0 | 4.49e-01 | 98.2% | 81.7% |
| 3iwcB00 | 3.30.360.110 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain | 0.58 | 44.0 | 4.28e-01 | 81.8% | 98.4% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 45.0 | 2.92e-01 | 85.5% | 20.4% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.58 | 43.0 | 3.12e-01 | 81.8% | 63.6% |
| 2pb7A01 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.58 | 49.0 | 3.50e-01 | 100.0% | 60.5% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 42.0 | 3.46e-01 | 100.0% | 40.5% |
| 4nfwF00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 47.0 | 3.55e-01 | 100.0% | 52.3% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 51.0 | 4.36e-01 | 100.0% | 63.2% |
| 2q2rA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 47.0 | 3.31e-01 | 100.0% | 32.3% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.18e-01 | 83.6% | 39.5% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 42.0 | 2.90e-01 | 100.0% | 85.7% |
| 6ixyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.43e-01 | 100.0% | 98.5% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.53 | 39.0 | 2.67e-01 | 81.8% | 43.6% |
| 6w1kA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.52 | 41.0 | 2.71e-01 | 94.5% | 79.1% |
| 1a5yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 39.0 | 2.56e-01 | 85.5% | 21.5% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.52 | 43.0 | 3.43e-01 | 100.0% | 81.0% |
| 4nzrM02 | 2.160.20.180 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.52 | 38.0 | 2.66e-01 | 80.0% | 30.4% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 43.0 | 2.88e-01 | 100.0% | 48.6% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 36.0 | 3.17e-01 | 76.4% | 85.1% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.51 | 42.0 | 3.30e-01 | 100.0% | 61.8% |
| 1qe5A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.51 | 45.0 | 2.89e-01 | 100.0% | 27.1% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 41.0 | 3.83e-01 | 100.0% | 98.7% |
| 4mpoB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 40.0 | 3.15e-01 | 100.0% | 61.5% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 39.0 | 3.33e-01 | 100.0% | 48.6% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.50 | 44.0 | 3.80e-01 | 100.0% | 75.3% |
| 1vc9A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 40.0 | 3.31e-01 | 100.0% | 63.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3747587 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.76 | 67.0 | 5.20e-01 | 100.0% | 68.3% |
| 2138090 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.72 | 50.0 | 4.74e-01 | 100.0% | 61.5% |
| 3191369 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.70 | 61.0 | 4.70e-01 | 100.0% | 84.6% |
| 5070341 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.68 | 53.0 | 4.12e-01 | 87.3% | 96.8% |
| 5056723 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 57.0 | 4.77e-01 | 100.0% | 65.3% |
| 3716787 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 50.0 | 4.02e-01 | 100.0% | 43.6% |
| 3702749 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.63 | 50.0 | 4.01e-01 | 100.0% | 43.6% |
| 4927437 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 40.0 | 3.80e-01 | 100.0% | 51.4% |
| 4011378 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.61 | 41.0 | 2.97e-01 | 70.9% | 50.9% |
| 3603247 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.61 | 49.0 | 3.93e-01 | 100.0% | 42.5% |
| 3914493 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.60 | 46.0 | 2.66e-01 | 85.5% | 10.3% |
| 3867704 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.60 | 46.0 | 2.91e-01 | 85.5% | 20.0% |
| 3925978 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.60 | 51.0 | 3.72e-01 | 100.0% | 75.8% |
| 5016162 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 48.0 | 3.81e-01 | 100.0% | 42.5% |
| 3635381 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 51.0 | 3.25e-01 | 100.0% | 26.5% |
| 1144813 | 4.1.1.107 ↗ | beta barrels › SH3 › SH3 › SH3 › XRN1_D1 | 0.57 | 38.0 | 2.76e-01 | 70.9% | 52.5% |
| 4877358 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.57 | 49.0 | 4.09e-01 | 100.0% | 87.0% |
| 135447 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.57 | 46.0 | 3.53e-01 | 100.0% | 52.3% |
| 4996041 | 2.1.1.123 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 | 0.56 | 42.0 | 3.37e-01 | 100.0% | 39.2% |
| 3692168 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 47.0 | 2.76e-01 | 98.2% | 32.5% |
| 5041943 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 38.0 | 3.41e-01 | 100.0% | 48.2% |
| 5058482 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.55 | 45.0 | 3.50e-01 | 100.0% | 61.4% |
| 5061791 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.54 | 44.0 | 3.53e-01 | 100.0% | 63.1% |
| 3803039 | 221.3.1.6 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains › DUF7811 | 0.54 | 45.0 | 3.81e-01 | 100.0% | 62.5% |
| 4647372 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.54 | 48.0 | 3.28e-01 | 100.0% | 34.3% |
| 4934697 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 40.0 | 3.42e-01 | 100.0% | 47.0% |
| 5036292 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 38.0 | 3.12e-01 | 92.7% | 39.1% |
| 4926970 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.53 | 42.0 | 3.32e-01 | 100.0% | 60.4% |
| 3640795 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 43.0 | 2.99e-01 | 98.2% | 46.0% |
| 4945684 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.52 | 36.0 | 2.92e-01 | 80.0% | 35.7% |
| 3325850 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 36.0 | 2.64e-01 | 78.2% | 58.9% |
| 4937578 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.51 | 42.0 | 3.33e-01 | 100.0% | 60.7% |
| 5037035 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.51 | 39.0 | 2.86e-01 | 100.0% | 28.9% |
| 4001904 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.51 | 42.0 | 3.57e-01 | 96.4% | 60.0% |
| 5060135 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.50 | 43.0 | 3.03e-01 | 100.0% | 31.9% |