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DQ320509.1__ABD78797.1__X__00020
Bact-VirDQ320509.1__ABD78797.1__X__00020
Identity
- Accession:
- DQ320509 ↗
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-78
Domain cluster:
rep: OP172803.1__WAX15722.1__EG103P3_00053__00053__D5-62
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bbjA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.65 | 57.0 | 3.72e-01 | 100.0% | 88.4% |
| 1okjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 50.0 | 4.31e-01 | 89.8% | 53.7% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.61 | 53.0 | 4.08e-01 | 100.0% | 44.2% |
| 6n9aB02 | 3.30.420.200 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 43.0 | 4.14e-01 | 91.5% | 66.7% |
| 1x99A00 | 2.60.270.20 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin | 0.60 | 51.0 | 3.88e-01 | 96.6% | 86.2% |
| 1a1aB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 47.0 | 4.01e-01 | 96.6% | 51.0% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 41.0 | 3.40e-01 | 74.6% | 71.1% |
| 4a8jB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 45.0 | 3.08e-01 | 83.1% | 36.4% |
| 1ym5A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.58 | 48.0 | 3.61e-01 | 94.9% | 79.1% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.58 | 44.0 | 3.55e-01 | 84.7% | 89.3% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.58 | 43.0 | 4.20e-01 | 83.1% | 73.0% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.56 | 43.0 | 2.83e-01 | 98.3% | 19.4% |
| 3kenA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.56 | 44.0 | 2.77e-01 | 86.4% | 33.0% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.56 | 38.0 | 3.26e-01 | 76.3% | 40.8% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 48.0 | 4.10e-01 | 100.0% | 98.0% |
| 4za3A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.54 | 42.0 | 3.08e-01 | 84.7% | 40.5% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 44.0 | 3.17e-01 | 100.0% | 84.9% |
| 2jjdF02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 47.0 | 3.13e-01 | 100.0% | 26.7% |
| 1i72A00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 44.0 | 2.91e-01 | 96.6% | 21.5% |
| 6x6aA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 46.0 | 3.01e-01 | 100.0% | 40.6% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 43.0 | 3.09e-01 | 100.0% | 84.1% |
| 2lc4A00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 41.0 | 3.41e-01 | 86.4% | 85.6% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 43.0 | 3.05e-01 | 100.0% | 85.2% |
| 3jvvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 45.0 | 3.88e-01 | 100.0% | 99.0% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.53 | 38.0 | 3.30e-01 | 100.0% | 46.1% |
| 5y6iA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 44.0 | 3.35e-01 | 100.0% | 52.2% |
| 6x5vA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.62e-01 | 88.1% | 70.8% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 44.0 | 3.72e-01 | 98.3% | 98.1% |
| 1uurA04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 38.0 | 3.09e-01 | 89.8% | 36.8% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 41.0 | 3.01e-01 | 88.1% | 76.4% |
| 4ns4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 44.0 | 2.90e-01 | 98.3% | 54.2% |
| 1dt9A01 | 3.30.960.10 | Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 | 0.51 | 44.0 | 3.71e-01 | 98.3% | 61.0% |
| 1st8A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 36.0 | 2.37e-01 | 79.7% | 47.1% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 44.0 | 3.61e-01 | 100.0% | 67.0% |
| 5tjjB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 42.0 | 3.13e-01 | 100.0% | 34.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030120 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.76 | 43.0 | 2.46e-01 | 98.3% | 6.6% |
| 3531933 | 3121.1.1.11 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › PF27961 | 0.70 | 62.0 | 5.54e-01 | 100.0% | 72.3% |
| 3999127 | 109.21.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 | 0.66 | 43.0 | 2.43e-01 | 74.6% | 5.6% |
| 3940149 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.65 | 53.0 | 4.66e-01 | 100.0% | 60.0% |
| 3439646 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.63 | 55.0 | 4.60e-01 | 100.0% | 60.0% |
| 3735728 | 225.1.1.19 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › SACS | 0.62 | 50.0 | 3.39e-01 | 91.5% | 77.9% |
| 5083758 | 12.6.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M | 0.62 | 40.0 | 3.70e-01 | 79.7% | 52.0% |
| 3575222 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.60 | 52.0 | 5.23e-01 | 100.0% | 98.3% |
| 3658323 | 284.1.2.1 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C | 0.60 | 51.0 | 4.28e-01 | 98.3% | 54.3% |
| 4160858 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.60 | 48.0 | 3.66e-01 | 89.8% | 37.6% |
| 4433785 | 283.2.1.4 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GP46 | 0.60 | 49.0 | 3.99e-01 | 100.0% | 69.2% |
| 5053568 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 51.0 | 4.02e-01 | 100.0% | 45.2% |
| 3805804 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.58 | 42.0 | 3.73e-01 | 88.1% | 52.9% |
| 3600888 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.58 | 50.0 | 3.49e-01 | 96.6% | 54.9% |
| 3981113 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.58 | 50.0 | 4.16e-01 | 100.0% | 75.2% |
| 4992877 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.58 | 44.0 | 2.98e-01 | 86.4% | 73.6% |
| 5021185 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.58 | 45.0 | 3.19e-01 | 84.7% | 35.4% |
| 3819740 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.57 | 42.0 | 3.61e-01 | 83.1% | 50.0% |
| 3991847 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 3.19e-01 | 88.1% | 81.5% |
| 3971224 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 49.0 | 3.37e-01 | 100.0% | 35.6% |
| 3165990 | 310.3.1.22 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27480, PF30181 | 0.57 | 49.0 | 3.99e-01 | 98.3% | 73.9% |
| 3060581 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.56 | 43.0 | 4.38e-01 | 98.3% | 87.5% |
| 3213270 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.54e-01 | 94.9% | 77.1% |
| 3512923 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 42.0 | 3.33e-01 | 91.5% | 37.9% |
| 3480669 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.54 | 44.0 | 3.41e-01 | 93.2% | 73.4% |
| 4019953 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.54 | 43.0 | 2.65e-01 | 89.8% | 91.2% |
| 4451493 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.53 | 38.0 | 2.75e-01 | 76.3% | 29.1% |
| 3897308 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.52 | 42.0 | 3.05e-01 | 88.1% | 75.0% |
| 312351 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.51 | 40.0 | 3.03e-01 | 91.5% | 32.5% |
| 3707978 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.51 | 42.0 | 3.05e-01 | 96.6% | 56.9% |
| 3875866 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.51 | 39.0 | 2.82e-01 | 81.4% | 30.0% |
| 4013569 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.51 | 43.0 | 3.07e-01 | 98.3% | 84.6% |
| 5060264 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.51 | 43.0 | 2.72e-01 | 94.9% | 98.4% |
| 3286878 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.50 | 38.0 | 2.77e-01 | 83.1% | 31.5% |