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DQ372923.1__ABD94179.1__X__00014

Bact-Vir

DQ372923.1__ABD94179.1__X__00014

Identity

Accession:
DQ372923 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-214
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18897.6 best Gp3-like 147.9 4.80e-43 96.1% 99.5%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 31.0 4.21e-01 84.7% 97.1%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 30.0 4.22e-01 86.2% 100.0%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 32.0 4.22e-01 91.1% 100.0%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 26.0 3.24e-01 96.6% 69.3%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 28.0 3.89e-01 76.4% 97.1%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 28.0 3.86e-01 82.3% 100.0%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 26.0 3.40e-01 92.1% 78.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 26.0 3.49e-01 84.2% 96.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3639738 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.69 25.0 4.34e-01 77.8% 100.0%
3783432 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 30.0 4.20e-01 83.3% 99.0%
4232994 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 32.0 4.22e-01 95.1% 98.2%
4032314 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 31.0 3.99e-01 77.8% 93.0%
3599571 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 30.0 3.91e-01 82.8% 91.3%
3473720 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 30.0 4.03e-01 81.8% 96.4%
3712376 2.1.1.225 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.55 29.0 3.78e-01 82.8% 87.5%
3577252 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 28.0 3.62e-01 95.1% 93.6%
D2 high residues 308-359
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.76 69.0 5.74e-01 100.0% 66.3%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.73 50.0 4.58e-01 73.1% 98.6%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 5.58e-01 92.3% 100.0%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.68 46.0 3.43e-01 71.2% 28.8%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 5.16e-01 92.3% 83.6%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 42.0 4.41e-01 80.8% 70.8%
2esbA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.66 43.0 3.12e-01 71.2% 22.2%
1j77A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.65 56.0 3.81e-01 100.0% 86.4%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.64 40.0 3.72e-01 76.9% 50.8%
3o8jA02 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.64 54.0 4.45e-01 98.1% 52.5%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 52.0 4.60e-01 100.0% 70.4%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 45.0 4.33e-01 100.0% 69.5%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 42.0 4.42e-01 100.0% 95.0%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 39.0 3.95e-01 71.2% 64.2%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.61 51.0 4.56e-01 100.0% 67.9%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.60 48.0 4.31e-01 100.0% 82.4%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 42.0 3.99e-01 100.0% 59.1%
1ng6A02 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 41.0 4.01e-01 73.1% 70.2%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 39.0 3.20e-01 86.5% 35.3%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 51.0 4.52e-01 100.0% 78.2%
3qvmB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 48.0 3.14e-01 100.0% 82.5%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.58 38.0 3.36e-01 76.9% 43.4%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.58 39.0 3.74e-01 71.2% 65.1%
4l8kA01 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.58 50.0 4.25e-01 100.0% 63.3%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.57 40.0 3.91e-01 71.2% 82.5%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 41.0 4.24e-01 100.0% 89.1%
3b5iA02 1.10.1200.220 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.57 40.0 3.39e-01 76.9% 95.8%
4yosA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 48.0 3.51e-01 100.0% 43.8%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.57 39.0 2.61e-01 73.1% 20.2%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 38.0 3.66e-01 100.0% 58.2%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 39.0 2.75e-01 76.9% 51.6%
3rrwB01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.55 40.0 2.76e-01 78.8% 96.7%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.54 40.0 3.13e-01 78.8% 42.5%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 46.0 3.97e-01 96.2% 93.9%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 46.0 4.11e-01 100.0% 75.6%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 47.0 4.05e-01 100.0% 94.0%
7swlB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 42.0 3.55e-01 96.2% 75.7%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.53 42.0 3.95e-01 96.2% 77.5%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.53 37.0 3.61e-01 76.9% 100.0%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.53 40.0 3.72e-01 84.6% 65.2%
2d9jA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.52 39.0 3.54e-01 100.0% 59.5%
3mhsB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.51 37.0 3.21e-01 82.7% 46.2%
1x3zA03 1.10.1740.90 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.51 37.0 3.17e-01 80.8% 46.6%
3ckcA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 41.0 2.94e-01 96.2% 87.6%
4ezeB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 41.0 2.65e-01 100.0% 22.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3986190 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.79 70.0 5.78e-01 100.0% 62.4%
4010451 3788.1.1.15 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.77 66.0 5.95e-01 100.0% 74.7%
4993069 632.12.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 0.71 63.0 5.92e-01 100.0% 87.3%
4115902 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.70 45.0 4.49e-01 73.1% 61.8%
3610816 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 58.0 5.02e-01 100.0% 60.0%
3789626 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 47.0 4.41e-01 73.1% 60.0%
5036290 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.68 57.0 5.62e-01 96.2% 90.9%
3226857 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.66 46.0 3.96e-01 73.1% 45.9%
4926993 6049.1.1.0 alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.66 57.0 4.68e-01 100.0% 57.0%
4941976 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.65 58.0 4.52e-01 100.0% 53.6%
3924709 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.65 44.0 4.13e-01 71.2% 63.1%
3434511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 44.0 4.15e-01 71.2% 60.0%
4179226 3171.1.1.1 alpha arrays › Nitrogenase gamma subunit N-terminal domain › Nitrogenase gamma subunit N-terminal domain › Nitrogenase gamma subunit N-terminal domain › DIMCO_N 0.65 55.0 4.85e-01 100.0% 92.5%
3926339 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 43.0 2.90e-01 71.2% 20.0%
3214843 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.62 43.0 3.08e-01 73.1% 35.6%
4585171 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.62 50.0 4.97e-01 98.1% 87.3%
5060252 632.23.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.61 51.0 4.48e-01 100.0% 72.9%
3472218 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.60 43.0 4.31e-01 100.0% 72.7%
3728568 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.60 51.0 4.93e-01 100.0% 95.0%
3941474 2485.1.1.41 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_4 0.59 50.0 3.46e-01 100.0% 26.7%
4046570 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.58 46.0 4.48e-01 98.1% 80.0%
3251599 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.53e-01 71.2% 60.0%
4935755 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.57 47.0 4.23e-01 94.2% 94.7%
4994576 101.35.1.36 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF27234 0.56 38.0 3.56e-01 71.2% 65.2%
5036270 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.56 49.0 4.22e-01 94.2% 87.2%
3426842 109.4.1.471 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC 0.55 40.0 2.58e-01 76.9% 19.2%
3226963 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 44.0 4.20e-01 100.0% 92.3%
3596650 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 38.0 3.46e-01 75.0% 60.0%
3781604 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.54 44.0 3.58e-01 100.0% 81.7%
4031147 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.53 45.0 4.35e-01 96.2% 98.3%
3353941 1134.1.1.7 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.52 47.0 4.33e-01 100.0% 78.5%
3220045 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 43.0 3.22e-01 92.3% 80.0%
3510680 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.52 37.0 3.36e-01 75.0% 64.3%
3967708 179.1.1.1 alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.52 33.0 2.91e-01 76.9% 37.8%
3500309 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.51 41.0 3.55e-01 100.0% 55.8%
4430705 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.51 41.0 2.96e-01 98.1% 61.5%
4974816 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 41.0 3.37e-01 98.1% 52.7%
5051839 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.50 40.0 3.66e-01 100.0% 73.8%