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DQ394810.1__ABD63850.1__X__00002

Bact-Vir

DQ394810.1__ABD63850.1__X__00002

Identity

Accession:
DQ394810 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactococcus_phage_phismq86

TaxID: 444474

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-178
PDB
Domain cluster: rep: KC237729.1__AGH27917.1__phiCP51_0026__00026__D12-130
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08000.18 best bPH_1 71.9 6.30e-20 93.7% 86.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.83 69.0 7.20e-01 95.3% 94.9%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.75 54.0 6.02e-01 81.1% 95.0%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 52.0 5.44e-01 80.3% 81.7%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 51.0 5.65e-01 80.3% 94.1%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 55.0 5.87e-01 89.8% 98.2%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 55.0 5.60e-01 86.6% 94.5%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.67 52.0 5.14e-01 81.1% 95.6%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 59.0 5.62e-01 96.9% 82.0%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 38.0 4.02e-01 89.8% 64.3%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 52.0 5.06e-01 86.6% 83.7%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 45.0 4.65e-01 76.4% 96.7%
1ki1B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 55.0 5.29e-01 97.6% 98.6%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.52 44.0 3.30e-01 93.7% 53.2%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 3.57e-01 70.1% 76.8%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3283795 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.91 78.0 8.17e-01 96.1% 97.4%
4953145 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.83 70.0 7.35e-01 87.4% 100.0%
135359 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.83 69.0 7.03e-01 95.3% 89.6%
3247727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.81 66.0 6.39e-01 93.7% 77.1%
5056976 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 61.0 6.78e-01 96.1% 100.0%
1141835 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.79 68.0 6.98e-01 96.1% 95.9%
5031433 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 59.0 6.65e-01 83.5% 100.0%
5001552 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.76 55.0 6.25e-01 86.6% 100.0%
4338151 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.75 67.0 6.43e-01 95.3% 100.0%
3271575 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 68.0 6.27e-01 94.5% 93.5%
4926953 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 64.0 6.77e-01 92.9% 100.0%
3507093 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.74 67.0 5.92e-01 97.6% 89.6%
4304407 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.74 68.0 6.72e-01 98.4% 95.6%
3631248 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.74 59.0 5.96e-01 83.5% 95.2%
4984268 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.73 55.0 6.15e-01 96.1% 100.0%
3568302 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.73 65.0 5.69e-01 94.5% 78.9%
3191108 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.73 68.0 5.81e-01 100.0% 89.7%
3611207 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 63.0 5.34e-01 92.1% 98.0%
3224250 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 62.0 5.92e-01 89.8% 95.9%
3451636 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 63.0 5.64e-01 92.9% 77.7%
3181728 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 65.0 6.49e-01 96.9% 96.9%
3709133 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 54.0 5.56e-01 77.2% 95.8%
3407058 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.72 66.0 5.81e-01 98.4% 89.4%
3221529 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 66.0 6.39e-01 97.6% 93.6%
3266298 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 66.0 6.52e-01 99.2% 94.8%
3713382 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.71 52.0 5.70e-01 94.5% 91.4%
3383629 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 56.0 5.55e-01 82.7% 100.0%
3733887 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 65.0 6.26e-01 97.6% 89.3%
3325534 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.71 54.0 5.53e-01 80.3% 95.2%
4025181 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 57.0 6.14e-01 91.3% 98.2%
3249874 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.70 65.0 5.98e-01 99.2% 95.0%
3701022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 56.0 5.66e-01 84.3% 99.2%
4029264 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 62.0 5.98e-01 94.5% 94.3%
3704470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 54.0 5.28e-01 81.9% 97.1%
3602032 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 62.0 5.70e-01 95.3% 100.0%
3427136 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 54.0 5.36e-01 80.3% 100.0%
3245139 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.69 63.0 5.89e-01 98.4% 91.0%
3512127 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.69 54.0 5.70e-01 81.9% 96.5%
3885860 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.69 63.0 5.50e-01 97.6% 87.6%
3643001 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 53.0 5.46e-01 81.1% 96.7%
4276145 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.68 54.0 5.75e-01 94.5% 96.3%
4484723 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.68 51.0 5.54e-01 78.7% 96.2%
4051690 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.68 52.0 5.73e-01 93.7% 98.1%
3531333 220.1.1.35 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.67 60.0 5.44e-01 95.3% 92.1%
3487057 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 61.0 5.99e-01 98.4% 95.6%
3514750 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.67 54.0 5.73e-01 96.1% 97.3%
4137634 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 47.0 5.31e-01 81.9% 96.8%
3708818 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 52.0 5.50e-01 82.7% 100.0%
3578693 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.66 60.0 5.53e-01 98.4% 81.9%
3533574 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 60.0 5.73e-01 98.4% 91.0%
3720410 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.66 53.0 5.19e-01 84.3% 83.0%
3803797 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.65 56.0 5.82e-01 96.1% 96.7%
4169409 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.65 53.0 5.56e-01 94.5% 96.5%
3904562 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.64 37.0 4.52e-01 74.0% 88.7%
3659150 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 5.33e-01 83.5% 100.0%
3313202 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.62 55.0 5.49e-01 96.1% 95.4%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 30.0 3.63e-01 70.9% 70.6%
4963443 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.60 41.0 4.72e-01 90.6% 92.6%
3451695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 33.0 3.86e-01 75.6% 76.7%
3784861 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.59 52.0 5.19e-01 95.3% 96.2%
3793856 5.1.4.421 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.58 43.0 2.67e-01 76.4% 21.0%
3608300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 4.96e-01 96.9% 93.3%
3410503 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.84e-01 94.5% 87.7%
3664734 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 52.0 4.71e-01 98.4% 92.9%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 31.0 3.64e-01 85.8% 81.2%
3593378 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 34.0 3.52e-01 70.1% 64.2%
3694763 375.1.1.222 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29994 0.54 33.0 3.32e-01 83.5% 58.5%
3917456 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.53 46.0 3.25e-01 97.6% 53.2%
3183677 523.1.1.3 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.52 32.0 3.40e-01 82.7% 69.1%
3168413 2.1.1.329 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29994 0.52 32.0 3.38e-01 82.7% 69.1%
3781119 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.52 44.0 2.99e-01 89.8% 43.2%
3249061 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 42.0 3.12e-01 87.4% 65.3%
None — 0.51 41.0 3.22e-01 85.0% 55.5%
3413325 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 39.0 2.77e-01 79.5% 75.5%
3404770 5.1.4.175 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT122_2nd 0.50 41.0 3.23e-01 87.4% 55.2%
3404226 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 3.11e-01 89.0% 60.6%
D2 medium residues 1-51
PDB