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DQ398043.1__ABE67324.1__PBI_CHE12_2__00002

Bact-Vir

DQ398043.1__ABE67324.1__PBI_CHE12_2__00002

Identity

Accession:
DQ398043 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fromanvirus› Mycobacterium_phage_Che12

TaxID: 2911435

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-132
PDB
Domain cluster: rep: NC_031004.1__YP_009277926.1__BIZ68_gp08__00008__D362-456
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j7nA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.75 69.0 5.33e-01 100.0% 50.0%
3l3bA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 52.0 4.24e-01 100.0% 96.2%
3e11A00 3.30.2010.20 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.56 47.0 4.62e-01 95.2% 84.2%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 48.0 3.89e-01 100.0% 85.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4216497 2498.1.1.34 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › ATLF 0.77 72.0 5.40e-01 100.0% 46.4%
D2 high residues 144-220
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 54.0 5.12e-01 100.0% 98.9%
6ncvA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 51.0 4.90e-01 100.0% 96.7%
6e1kA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 47.0 4.26e-01 100.0% 69.6%
1l7vA00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.53 42.0 2.78e-01 85.7% 78.0%
1ki1B01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.52 45.0 3.39e-01 100.0% 64.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3309615 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.72 65.0 4.47e-01 100.0% 36.2%
3806243 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.71 64.0 4.84e-01 100.0% 52.2%
3528853 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.69 62.0 3.54e-01 100.0% 10.1%
3756884 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.69 62.0 4.47e-01 100.0% 35.8%
3707773 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.68 61.0 4.68e-01 100.0% 46.3%
3477202 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.68 61.0 4.82e-01 100.0% 51.6%
3369741 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.67 59.0 4.79e-01 100.0% 52.0%
None — 0.66 40.0 3.88e-01 92.2% 54.1%
2392605 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.59 50.0 4.08e-01 100.0% 55.0%
4556338 140.1.1.7 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.57 50.0 4.13e-01 100.0% 83.4%
4492279 140.1.1.4 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.55 47.0 3.81e-01 97.4% 76.0%
4656857 140.1.1.4 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.53 45.0 3.43e-01 96.1% 54.4%
4060723 140.1.1.4 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.52 41.0 3.32e-01 85.7% 50.7%
3368755 148.1.3.180 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › zf-RVT 0.52 40.0 3.50e-01 85.7% 91.2%
4266867 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.51 38.0 3.31e-01 77.9% 79.7%