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DQ398049.1__ABD58531.1__PBI_PIPEFISH_34__00034
Bact-VirDQ398049.1__ABD58531.1__PBI_PIPEFISH_34__00034
Identity
- Accession:
- DQ398049 ↗
- Kingdom:
- phage
Quality
60.2
mean pLDDT
Taxonomy
TaxID: 373413
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-82
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8B03 | 3.30.1430.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › | 0.76 | 57.0 | 4.43e-01 | 82.0% | 74.8% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.73 | 50.0 | 5.20e-01 | 72.0% | 100.0% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.69 | 50.0 | 5.04e-01 | 78.0% | 96.0% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.67 | 41.0 | 3.25e-01 | 100.0% | 28.3% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.66 | 51.0 | 3.68e-01 | 86.0% | 52.4% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 45.0 | 4.02e-01 | 74.0% | 68.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 44.0 | 3.15e-01 | 74.0% | 47.9% |
| 3q9cA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.64 | 54.0 | 3.33e-01 | 100.0% | 92.1% |
| 2kswA01 | 3.30.1490.260 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.61 | 43.0 | 4.42e-01 | 86.0% | 84.8% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.60 | 45.0 | 3.07e-01 | 84.0% | 21.5% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 50.0 | 4.09e-01 | 100.0% | 72.9% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 44.0 | 3.75e-01 | 88.0% | 94.6% |
| 1yb2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 40.0 | 2.72e-01 | 80.0% | 30.9% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.57 | 36.0 | 4.02e-01 | 96.0% | 91.7% |
| 3lovA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.54 | 39.0 | 2.68e-01 | 80.0% | 67.8% |
| 2iq1A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.53 | 42.0 | 2.83e-01 | 100.0% | 42.4% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 37.0 | 3.17e-01 | 80.0% | 61.1% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 43.0 | 2.87e-01 | 100.0% | 38.6% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 42.0 | 3.08e-01 | 100.0% | 97.5% |
| 1nxmA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 39.0 | 2.80e-01 | 98.0% | 51.0% |
| 3zjaA01 | 2.60.40.1890 | Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone | 0.50 | 39.0 | 3.13e-01 | 88.0% | 44.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.73 | 52.0 | 5.34e-01 | 78.0% | 95.8% |
| 4949204 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.72 | 50.0 | 3.29e-01 | 74.0% | 18.7% |
| 3289607 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.71 | 50.0 | 3.18e-01 | 74.0% | 15.7% |
| 3299222 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.69 | 51.0 | 5.36e-01 | 80.0% | 97.7% |
| 4125200 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.69 | 55.0 | 4.56e-01 | 86.0% | 98.8% |
| 3280250 | 1059.1.1.1 ↗ | a+b two layers › Omega-3 polyunsaturated fatty acid synthase subunit PfaD N-terminal domain › Omega-3 polyunsaturated fatty acid synthase subunit PfaD N-terminal domain › Omega-3 polyunsaturated fatty acid synthase subunit PfaD N-terminal domain › PfaD_N | 0.67 | 41.0 | 4.32e-01 | 72.0% | 68.9% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.66 | 50.0 | 4.74e-01 | 84.0% | 70.0% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.66 | 48.0 | 3.26e-01 | 80.0% | 29.5% |
| 3894181 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.66 | 51.0 | 3.49e-01 | 86.0% | 42.9% |
| 4624010 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.66 | 43.0 | 2.64e-01 | 74.0% | 10.1% |
| 4017407 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.62 | 52.0 | 4.64e-01 | 92.0% | 77.1% |
| 3669087 | 304.7.1.11 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › MORF_dom | 0.62 | 43.0 | 4.33e-01 | 74.0% | 82.0% |
| 5016169 | 3769.1.1.0 ↗ | 0.62 | 54.0 | 5.40e-01 | 100.0% | 100.0% | |
| 3612075 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 51.0 | 3.40e-01 | 96.0% | 25.2% |
| 3624854 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.61 | 47.0 | 3.92e-01 | 88.0% | 81.1% |
| 3389045 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.60 | 46.0 | 4.69e-01 | 92.0% | 84.0% |
| 3621341 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.58 | 41.0 | 3.71e-01 | 78.0% | 100.0% |
| 3410496 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.58 | 42.0 | 4.30e-01 | 84.0% | 85.4% |
| 3593442 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 40.0 | 3.26e-01 | 78.0% | 39.0% |
| 4026230 | 3156.3.1.2 ↗ | beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › s48_45 | 0.56 | 42.0 | 3.10e-01 | 82.0% | 47.1% |
| 3487089 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 45.0 | 3.48e-01 | 90.0% | 51.3% |
| 3260247 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.55 | 39.0 | 3.44e-01 | 78.0% | 90.4% |
| 3310123 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.55 | 40.0 | 2.81e-01 | 80.0% | 35.4% |
| 3808421 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.55 | 37.0 | 2.81e-01 | 74.0% | 28.3% |
| 2067545 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.54 | 37.0 | 2.46e-01 | 74.0% | 40.0% |
| 908 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.53 | 37.0 | 3.32e-01 | 78.0% | 83.7% |
| 1710492 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.51 | 42.0 | 3.08e-01 | 100.0% | 97.5% |
| 3936863 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 43.0 | 2.76e-01 | 94.0% | 45.3% |
| 3800155 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.50 | 39.0 | 3.45e-01 | 94.0% | 75.3% |
D2
high
residues 92-202