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DQ453159.1__ABI36849.1__X__00031
Bact-VirDQ453159.1__ABI36849.1__X__00031
Identity
- Accession:
- DQ453159 ↗
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-137
Domain cluster:
rep: ON453903.1__WAK79726.1__X__00049__D14-122
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09669.16 best | Phage_pRha | 105.3 | 2.80e-30 | 83.6% | 100.0% |
D2
high
residues 192-271
Domain cluster:
rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D183-251
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 38.0 | 3.74e-01 | 91.3% | 57.3% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 4.23e-01 | 96.2% | 70.9% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 42.0 | 4.05e-01 | 86.3% | 73.3% |
| 6wy9B02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.53 | 40.0 | 3.79e-01 | 97.5% | 67.4% |
| 4dzrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 39.0 | 3.20e-01 | 82.5% | 88.3% |
| 3hr6A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 38.0 | 3.05e-01 | 77.5% | 66.9% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.86e-01 | 83.7% | 84.2% |
| 1i7dA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.51 | 41.0 | 3.12e-01 | 85.0% | 55.0% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.51 | 41.0 | 3.24e-01 | 85.0% | 51.3% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 33.0 | 3.48e-01 | 75.0% | 72.0% |
| 2qy6A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 38.0 | 2.84e-01 | 85.0% | 85.1% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 37.0 | 2.67e-01 | 81.2% | 77.9% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.81e-01 | 96.2% | 70.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033072 | 101.1.9.32 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT | 0.82 | 74.0 | 7.29e-01 | 97.5% | 100.0% |
| 3588288 | 101.1.9.32 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT | 0.80 | 73.0 | 5.85e-01 | 100.0% | 58.0% |
| 3230114 | 101.1.2.167 ↗ | alpha arrays › HTH › HTH › winged helix domain › XRN1_D2_D3 | 0.75 | 68.0 | 5.42e-01 | 100.0% | 65.2% |
| 3506247 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 59.0 | 4.37e-01 | 100.0% | 37.4% |
| 5035395 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.67 | 43.0 | 3.40e-01 | 87.5% | 30.6% |
| 4277047 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 44.0 | 4.56e-01 | 100.0% | 74.7% |
| 4669204 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 44.0 | 2.73e-01 | 86.3% | 12.9% |
| 3968916 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.64 | 47.0 | 4.31e-01 | 98.8% | 59.0% |
| 4968695 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 47.0 | 3.73e-01 | 77.5% | 58.1% |
| 3984393 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.63 | 49.0 | 4.46e-01 | 98.8% | 61.8% |
| 5018590 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 46.0 | 4.03e-01 | 76.2% | 94.8% |
| 4995767 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.61 | 46.0 | 3.20e-01 | 81.2% | 24.4% |
| 5010819 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 3.55e-01 | 75.0% | 49.3% |
| 5056655 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 45.0 | 4.53e-01 | 100.0% | 80.0% |
| 5051534 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 46.0 | 3.50e-01 | 95.0% | 37.3% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 47.0 | 4.00e-01 | 95.0% | 54.6% |
| 3705453 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 46.0 | 3.25e-01 | 88.7% | 63.2% |
| 154263 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.55 | 46.0 | 4.23e-01 | 96.2% | 70.9% |
| 5011620 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 42.0 | 4.14e-01 | 95.0% | 75.6% |
| 4352407 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 40.0 | 4.25e-01 | 85.0% | 85.7% |
| 5046069 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 45.0 | 4.47e-01 | 96.2% | 83.5% |
| 3505855 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.54 | 43.0 | 4.38e-01 | 97.5% | 88.7% |
| 3386835 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.15e-01 | 76.2% | 92.5% |
| 3225917 | 2498.1.1.23 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 | 0.54 | 44.0 | 2.65e-01 | 92.5% | 27.0% |
| 5021859 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.53 | 40.0 | 4.46e-01 | 86.3% | 96.9% |
| 5064508 | 101.1.2.275 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF1495 | 0.53 | 46.0 | 4.29e-01 | 96.2% | 80.0% |
| 3705622 | 2008.1.1.118 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RHSP | 0.52 | 47.0 | 3.10e-01 | 98.8% | 48.5% |
| 5077356 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 45.0 | 3.91e-01 | 96.2% | 69.6% |
| 4149682 | 101.1.2.787 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27146, PF27262 | 0.52 | 46.0 | 3.65e-01 | 100.0% | 67.1% |
| 5031879 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.74e-01 | 85.0% | 67.4% |
| 2494143 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.51 | 43.0 | 3.90e-01 | 96.2% | 68.5% |
| 4633760 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.51 | 42.0 | 3.74e-01 | 95.0% | 63.7% |
| 3832580 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.50 | 42.0 | 3.72e-01 | 95.0% | 64.8% |
| 5050370 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.50 | 41.0 | 2.97e-01 | 86.3% | 35.2% |