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DQ453159.1__ABI36876.1__X__00058
Bact-VirDQ453159.1__ABI36876.1__X__00058
Identity
- Accession:
- DQ453159 ↗
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-46
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.87 | 60.0 | 4.29e-01 | 71.7% | 27.0% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 60.0 | 5.04e-01 | 76.1% | 47.9% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.78 | 56.0 | 5.40e-01 | 76.1% | 68.6% |
| 7vevA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.77 | 67.0 | 4.20e-01 | 100.0% | 71.4% |
| 4pfyA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.74 | 64.0 | 4.05e-01 | 100.0% | 73.9% |
| 1uiuA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.74 | 66.0 | 4.16e-01 | 100.0% | 69.7% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.73 | 62.0 | 4.67e-01 | 100.0% | 94.9% |
| 4h79A00 | 1.10.520.40 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 | 0.71 | 61.0 | 4.13e-01 | 100.0% | 36.7% |
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.68 | 57.0 | 4.96e-01 | 100.0% | 68.4% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 53.0 | 5.14e-01 | 100.0% | 80.0% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 53.0 | 5.27e-01 | 97.8% | 87.5% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.64 | 54.0 | 4.43e-01 | 100.0% | 51.1% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 40.0 | 3.59e-01 | 76.1% | 45.3% |
| 7esrA01 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.58 | 47.0 | 2.88e-01 | 97.8% | 82.8% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.56 | 45.0 | 4.27e-01 | 91.3% | 82.1% |
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.54 | 41.0 | 3.57e-01 | 84.8% | 61.6% |
| 1ao0A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 45.0 | 2.76e-01 | 95.7% | 44.0% |
| 2i7nA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 43.0 | 3.06e-01 | 100.0% | 90.3% |
| 2g80A02 | 1.10.720.60 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.50 | 41.0 | 3.58e-01 | 100.0% | 97.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3516714 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.78 | 59.0 | 3.90e-01 | 80.4% | 21.8% |
| None | — | 0.77 | 62.0 | 3.97e-01 | 89.1% | 20.0% | |
| 4938673 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.75 | 64.0 | 5.79e-01 | 100.0% | 75.4% |
| 3816356 | 568.1.1.8 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › GCK | 0.69 | 51.0 | 4.77e-01 | 89.1% | 63.3% |
| 3346359 | 3361.1.1.7 ↗ | alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › GATA_AreA | 0.68 | 61.0 | 5.52e-01 | 100.0% | 75.0% |
| 185069 | 632.3.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Paramyx_P_V_C | 0.67 | 53.0 | 5.27e-01 | 97.8% | 87.5% |
| 3347379 | 3470.1.1.26 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 | 0.66 | 46.0 | 4.08e-01 | 93.5% | 50.8% |
| 3603687 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.66 | 50.0 | 4.69e-01 | 100.0% | 65.6% |
| 3437143 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.59 | 44.0 | 4.44e-01 | 100.0% | 86.7% |
| 3543179 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.57 | 45.0 | 3.45e-01 | 93.5% | 35.6% |
| 3409049 | 110.1.1.9 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Dark_CARD | 0.56 | 47.0 | 3.77e-01 | 100.0% | 58.0% |
| 4416983 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.53 | 43.0 | 3.42e-01 | 100.0% | 79.1% |
| 3519172 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 36.0 | 3.56e-01 | 76.1% | 68.0% |
D2
high
residues 55-128
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y4oA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.63 | 39.0 | 3.55e-01 | 93.2% | 45.2% |
| 8d8lF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 44.0 | 3.79e-01 | 86.5% | 87.0% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 48.0 | 4.22e-01 | 100.0% | 69.7% |
| 3uk7A01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.53 | 36.0 | 2.75e-01 | 71.6% | 82.1% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.50e-01 | 75.7% | 86.3% |
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.52 | 39.0 | 2.96e-01 | 82.4% | 47.4% |
| 1gh8A00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 37.0 | 3.54e-01 | 77.0% | 83.1% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.49e-01 | 78.4% | 86.5% |
| 3caiA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 36.0 | 3.00e-01 | 74.3% | 79.1% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 32.0 | 3.14e-01 | 100.0% | 54.5% |
| 2gv9B04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.50 | 40.0 | 2.96e-01 | 86.5% | 84.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026519 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.64 | 34.0 | 2.76e-01 | 91.9% | 28.1% |
| 3968999 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.58 | 33.0 | 2.05e-01 | 91.9% | 9.2% |
| 4932382 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.55 | 37.0 | 2.98e-01 | 70.3% | 67.3% |
| 3958234 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.55 | 36.0 | 3.69e-01 | 82.4% | 70.0% |
| 4984491 | 304.139.1.0 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related | 0.54 | 42.0 | 3.21e-01 | 83.8% | 97.7% |
| 3699048 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 47.0 | 4.09e-01 | 98.6% | 65.2% |
| 3815772 | 109.4.1.1580 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C | 0.53 | 37.0 | 2.15e-01 | 100.0% | 8.2% |
| 3454218 | 109.4.1.890 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C | 0.53 | 36.0 | 2.64e-01 | 100.0% | 25.1% |
| 4977520 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 45.0 | 4.00e-01 | 100.0% | 71.8% |
| 4028741 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.52 | 38.0 | 3.22e-01 | 81.1% | 89.6% |
| 3773609 | 304.15.1.6 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › SGT1 | 0.51 | 38.0 | 2.85e-01 | 79.7% | 63.7% |
| 4128920 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.51 | 34.0 | 3.33e-01 | 70.3% | 92.9% |
| 3479702 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.51 | 37.0 | 3.29e-01 | 77.0% | 74.3% |
| 3838659 | 5085.1.1.0 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.51 | 37.0 | 2.44e-01 | 81.1% | 97.8% |
| 3771672 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.51 | 37.0 | 3.18e-01 | 81.1% | 78.5% |