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DQ490056.1__ABF22557.1__X__00003
Bact-VirDQ490056.1__ABF22557.1__X__00003
Identity
- Accession:
- DQ490056 ↗
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Taxonomy
TaxID: 382685
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-38
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k4iC02 | 1.20.5.3070 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.92 | 69.0 | 6.78e-01 | 80.6% | 76.3% |
| 1yqgA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.88 | 77.0 | 5.35e-01 | 100.0% | 31.9% |
| 3c3dA02 | 1.10.8.240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain | 0.86 | 71.0 | 5.35e-01 | 94.4% | 63.6% |
| 3triA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.85 | 72.0 | 5.24e-01 | 100.0% | 35.0% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 73.0 | 5.59e-01 | 100.0% | 71.4% |
| 3fkeA01 | 1.10.8.950 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain | 0.85 | 72.0 | 5.72e-01 | 94.4% | 53.5% |
| 1bvsF03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.83 | 64.0 | 6.07e-01 | 88.9% | 71.1% |
| 3l9wA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.79 | 67.0 | 4.36e-01 | 100.0% | 22.7% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.79 | 67.0 | 4.03e-01 | 100.0% | 15.1% |
| 2wzfA01 | 1.10.1740.130 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.78 | 60.0 | 4.48e-01 | 94.4% | 34.6% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.78 | 63.0 | 4.49e-01 | 100.0% | 29.7% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.76 | 65.0 | 3.84e-01 | 100.0% | 12.9% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 53.0 | 4.23e-01 | 83.3% | 43.2% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 51.0 | 5.03e-01 | 100.0% | 78.3% |
| 5dnyA03 | 6.10.10.50 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Mre11, C-terminal domain-like | 0.65 | 47.0 | 4.44e-01 | 83.3% | 63.0% |
| 2q0yA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 55.0 | 3.78e-01 | 100.0% | 28.3% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.64 | 52.0 | 3.34e-01 | 100.0% | 17.8% |
| 2euiA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 52.0 | 3.64e-01 | 100.0% | 27.1% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.63 | 52.0 | 3.90e-01 | 94.4% | 43.0% |
| 1nvpB00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 45.0 | 4.46e-01 | 94.4% | 81.4% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.61 | 46.0 | 3.76e-01 | 100.0% | 71.9% |
| 6znjB01 | 3.40.50.10950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 47.0 | 3.30e-01 | 100.0% | 24.0% |
| 5u3fB01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.59 | 50.0 | 3.40e-01 | 100.0% | 47.1% |
| 3tw5A02 | 3.30.40.240 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Transglutaminase elicitor, body domain | 0.59 | 46.0 | 3.76e-01 | 100.0% | 46.3% |
| 4oaqA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.58 | 49.0 | 3.04e-01 | 97.2% | 42.0% |
| 1x93A01 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.58 | 45.0 | 4.53e-01 | 100.0% | 97.1% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.56 | 42.0 | 2.94e-01 | 100.0% | 89.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4341419 | 4125.1.1.2 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like › HAAS | 0.95 | 81.0 | 6.39e-01 | 94.4% | 48.6% |
| 4189523 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.92 | 77.0 | 7.11e-01 | 91.7% | 73.3% |
| 3611781 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.91 | 80.0 | 5.00e-01 | 100.0% | 20.0% |
| 4995688 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.89 | 73.0 | 6.33e-01 | 94.4% | 60.0% |
| 3219554 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.87 | 75.0 | 6.79e-01 | 100.0% | 76.0% |
| 3174240 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.87 | 75.0 | 5.38e-01 | 100.0% | 34.3% |
| 5005057 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.87 | 76.0 | 5.21e-01 | 100.0% | 30.4% |
| 3813623 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.87 | 80.0 | 5.46e-01 | 100.0% | 33.6% |
| 3520048 | 129.1.1.14 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › DUF2520 | 0.87 | 76.0 | 5.28e-01 | 100.0% | 31.3% |
| 3286823 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.86 | 75.0 | 5.15e-01 | 100.0% | 30.0% |
| 3483458 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.86 | 74.0 | 5.25e-01 | 100.0% | 33.3% |
| 3881712 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.83 | 70.0 | 4.73e-01 | 100.0% | 26.7% |
| 3651379 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.82 | 67.0 | 4.58e-01 | 100.0% | 26.4% |
| 3685821 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.82 | 70.0 | 4.94e-01 | 100.0% | 31.3% |
| 957543 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.82 | 64.0 | 3.88e-01 | 91.7% | 13.8% |
| 3400315 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 67.0 | 5.94e-01 | 97.2% | 63.6% |
| 3284626 | 7581.1.1.2 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt | 0.78 | 63.0 | 3.68e-01 | 94.4% | 11.4% |
| 3297611 | 103.1.1.68 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › MOZART1 | 0.76 | 63.0 | 5.75e-01 | 100.0% | 70.0% |
| 3165239 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.76 | 64.0 | 4.01e-01 | 100.0% | 17.8% |
| 4472787 | 3018.1.1.3 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › PF28558 | 0.75 | 62.0 | 4.85e-01 | 97.2% | 60.0% |
| 5050003 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 57.0 | 3.92e-01 | 91.7% | 27.4% |
| 4379 | 3014.1.1.1 ↗ | alpha duplicates or obligate multimers › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › Mor | 0.69 | 51.0 | 5.03e-01 | 100.0% | 78.3% |
| 5065443 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.67 | 53.0 | 3.51e-01 | 91.7% | 21.3% |
| 5057910 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.66 | 50.0 | 3.22e-01 | 91.7% | 17.1% |
| 3788844 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.61 | 48.0 | 3.08e-01 | 94.4% | 63.0% |