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DQ490912.1__ABF57707.1__X__00002

Bact-Vir

DQ490912.1__ABF57707.1__X__00002

Identity

Accession:
DQ490912 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Enterobacteria_phage_MV14

TaxID: 383867

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-87
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04984.20 best Phage_sheath_1 32.8 8.30e-08 96.5% 38.7%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3foaB01 3.40.50.11780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.97 94.0 6.64e-01 100.0% 41.4%
1r6uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 60.0 4.26e-01 100.0% 48.8%
3jzmA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 39.0 2.85e-01 80.5% 23.4%
6nbrC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 51.0 3.56e-01 100.0% 48.4%
3pzgA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 48.0 3.19e-01 92.0% 83.8%
3d3aA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 50.0 3.54e-01 100.0% 79.3%
1bsvA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.56 39.0 3.82e-01 97.7% 67.0%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 44.0 3.60e-01 92.0% 96.6%
2ielA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 47.0 4.19e-01 100.0% 70.5%
1aipA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 3.78e-01 100.0% 87.3%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.53 29.0 2.92e-01 74.7% 48.9%
3i5xA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 46.0 3.33e-01 100.0% 46.5%
1ig3A02 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.52 39.0 3.34e-01 81.6% 77.6%
2hoeA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 39.0 3.32e-01 82.8% 90.3%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 30.0 3.35e-01 78.2% 76.9%
3q71A00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.50 38.0 2.98e-01 82.8% 40.4%
7caqA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.50 44.0 3.42e-01 100.0% 81.1%
2kdxA00 3.30.2320.80 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.50 42.0 3.91e-01 98.9% 90.8%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 3.43e-01 94.3% 94.1%
4gkbA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 44.0 3.21e-01 100.0% 53.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888782 2499.2.1.2 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.98 95.0 6.33e-01 100.0% 33.8%
4995822 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.95 78.0 5.35e-01 100.0% 29.0%
3978226 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.87 71.0 4.85e-01 100.0% 26.8%
4882286 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.83 62.0 5.10e-01 100.0% 45.0%
5004680 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.81 67.0 4.60e-01 100.0% 28.0%
3463104 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.58 51.0 3.79e-01 100.0% 60.0%
4995289 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 49.0 3.39e-01 96.6% 47.9%
3839064 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.57 50.0 3.85e-01 100.0% 53.3%
3836729 7589.1.1.2 ↗ a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C 0.55 40.0 3.13e-01 78.2% 41.0%
3380640 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 32.0 2.32e-01 72.4% 20.4%
4656758 7554.1.1.1 ↗ a/b three-layered sandwiches › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › iPGM_N 0.54 48.0 3.52e-01 100.0% 56.7%
4209046 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.53 45.0 2.62e-01 94.3% 82.1%
5054865 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.53 45.0 3.33e-01 97.7% 80.8%
3878864 2004.1.1.180 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_6 0.53 41.0 3.09e-01 83.9% 37.2%
4257805 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.52 43.0 2.57e-01 93.1% 83.8%
5073108 2004.1.1.119 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.52 46.0 3.66e-01 100.0% 89.4%
3709062 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.52 43.0 2.86e-01 95.4% 51.7%
4303138 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.52 46.0 3.45e-01 100.0% 60.0%
4572684 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.51 44.0 3.15e-01 100.0% 79.7%
4934759 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 43.0 3.19e-01 100.0% 88.5%
4492083 309.1.2.3 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA-Thr_ED 0.50 34.0 3.08e-01 81.6% 48.8%
11216 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.50 41.0 3.35e-01 90.8% 85.1%
D2 medium residues 88-164
PDB
Domain cluster: rep: Salt_Pond_R2_C_D2_MG_scaffold_7_prodigal-single.1__X__X__00109__D555-625
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04984.20 best Phage_sheath_1 49.5 6.20e-13 90.9% 39.9%