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DQ499600.1__ABF57486.1__X__00032
Bact-VirDQ499600.1__ABF57486.1__X__00032
Identity
- Accession:
- DQ499600 ↗
- Kingdom:
- phage
Quality
70.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Zierdtviridae›
Chunghsingvirus›
Corynebacterium_phage_P1201
TaxID: 384848
Cluster
View cluster (166 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-50_80-156_284-349
D2
high
residues 168-252_276-283
Domain cluster:
rep: OR354850.1__WNM55334.1__CoNPh27_CDS0068__00068__D76-191
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.74 | 69.0 | 4.72e-01 | 100.0% | 32.4% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.73 | 57.0 | 5.68e-01 | 95.7% | 81.9% |
| 3gbvA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 37.0 | 3.21e-01 | 90.3% | 36.2% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.61 | 56.0 | 5.11e-01 | 100.0% | 81.8% |
| 3bqwA02 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.61 | 55.0 | 4.82e-01 | 100.0% | 81.0% |
| 8dtpC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 44.0 | 3.26e-01 | 90.3% | 29.1% |
| 1wz2A04 | 3.30.2320.20 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › Class I aminoacyl-tRNA synthetases (RS) | 0.57 | 48.0 | 4.93e-01 | 97.8% | 97.7% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.54 | 36.0 | 3.55e-01 | 91.4% | 63.3% |
| 1rv9A00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.54 | 46.0 | 3.48e-01 | 97.8% | 71.9% |
| 3nqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.53 | 37.0 | 3.22e-01 | 71.0% | 89.7% |
| 4h0eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.94e-01 | 93.5% | 92.9% |
| 6vq6I01 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.51 | 42.0 | 4.05e-01 | 100.0% | 78.7% |
| 3nzpB02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.51 | 42.0 | 3.05e-01 | 91.4% | 45.8% |
| 2ggoA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 39.0 | 3.06e-01 | 100.0% | 37.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 333200 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.76 | 70.0 | 4.78e-01 | 100.0% | 33.7% |
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.73 | 66.0 | 4.28e-01 | 100.0% | 30.3% |
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.72 | 67.0 | 4.63e-01 | 100.0% | 35.3% |
| 2995627 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.70 | 65.0 | 4.44e-01 | 100.0% | 33.3% |
| 4937661 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.68 | 44.0 | 4.35e-01 | 100.0% | 61.0% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.66 | 60.0 | 4.09e-01 | 100.0% | 32.7% |
| 4994471 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.66 | 44.0 | 4.42e-01 | 100.0% | 67.4% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.65 | 59.0 | 4.11e-01 | 100.0% | 32.4% |
| 2894407 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.64 | 45.0 | 4.07e-01 | 100.0% | 53.9% |
| 5035596 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.62 | 46.0 | 3.70e-01 | 100.0% | 39.5% |
| 4261555 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.62 | 44.0 | 3.68e-01 | 100.0% | 42.4% |
| 5025399 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.62 | 49.0 | 5.24e-01 | 96.8% | 98.8% |
| 1005479 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.61 | 55.0 | 3.69e-01 | 100.0% | 32.0% |
| 5059229 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.59 | 36.0 | 3.72e-01 | 98.9% | 64.7% |
| 4992866 | 3464.1.1.1 ↗ | extended segments › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › vATP-synt_E | 0.59 | 48.0 | 3.95e-01 | 100.0% | 48.8% |
| 3707870 | 4193.1.1.0 ↗ | alpha arrays › RUN domain › RUN domain › RUN domain | 0.55 | 43.0 | 3.47e-01 | 86.0% | 95.4% |
| 4189709 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.53 | 45.0 | 3.48e-01 | 98.9% | 77.0% |
| 4369666 | 2004.1.1.43 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 | 0.52 | 43.0 | 3.32e-01 | 97.8% | 40.0% |
| 4558910 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.52 | 43.0 | 3.35e-01 | 91.4% | 62.4% |
| 3579672 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.51 | 28.0 | 3.54e-01 | 82.8% | 90.9% |
| 3801524 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 45.0 | 3.32e-01 | 96.8% | 53.8% |
| 4069073 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.50 | 43.0 | 4.14e-01 | 93.5% | 85.7% |