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DQ499600.1__ABF57517.1__X__00063

Bact-Vir

DQ499600.1__ABF57517.1__X__00063

Identity

Accession:
DQ499600 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 49.0 4.09e-01 72.7% 62.0%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.69 52.0 3.94e-01 80.5% 72.5%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.68 61.0 5.44e-01 100.0% 76.9%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.68 47.0 4.88e-01 71.4% 93.0%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 48.0 4.00e-01 76.6% 64.7%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.65 45.0 3.53e-01 100.0% 33.1%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.64 56.0 4.81e-01 100.0% 90.6%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.64 53.0 5.06e-01 93.5% 76.7%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.63 45.0 3.04e-01 74.0% 52.3%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 54.0 4.30e-01 100.0% 46.6%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.62 50.0 4.42e-01 87.0% 73.0%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.62 48.0 3.04e-01 83.1% 99.5%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.76e-01 75.3% 98.4%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.62 45.0 3.86e-01 76.6% 80.3%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.61 47.0 3.69e-01 83.1% 64.7%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 45.0 3.03e-01 77.9% 35.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 50.0 4.11e-01 90.9% 66.4%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 39.0 3.79e-01 71.4% 56.8%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 43.0 2.86e-01 77.9% 34.3%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 41.0 3.32e-01 72.7% 92.2%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 50.0 4.39e-01 94.8% 62.1%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 46.0 3.54e-01 84.4% 85.0%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 49.0 4.02e-01 92.2% 73.8%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.58 41.0 4.29e-01 76.6% 82.9%
3unbF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 51.0 3.57e-01 97.4% 52.0%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 50.0 3.74e-01 97.4% 61.3%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 49.0 4.48e-01 97.4% 93.3%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 48.0 3.74e-01 97.4% 70.9%
1y7bA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.11e-01 80.5% 48.8%
2glxA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 47.0 3.50e-01 100.0% 35.1%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 47.0 3.30e-01 100.0% 83.3%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.55 39.0 2.99e-01 72.7% 37.1%
4bjjB00 2.60.40.4370 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.84e-01 75.3% 87.1%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.15e-01 96.1% 92.2%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 4.08e-01 92.2% 84.8%
1dhxA03 3.90.249.10 Alpha Beta › Alpha-Beta Complex › Hexon Major Viral Coat Protein; domain 3 › Hexon Major Viral Coat Protein, domain 3 0.54 42.0 2.92e-01 83.1% 94.1%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.54 46.0 3.65e-01 97.4% 99.4%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.53 46.0 3.24e-01 98.7% 37.9%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.53 43.0 4.28e-01 90.9% 97.5%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 4.17e-01 93.5% 95.7%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 39.0 3.20e-01 94.8% 38.8%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.52 43.0 3.04e-01 93.5% 36.3%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.29e-01 98.7% 85.4%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.34e-01 85.7% 71.6%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 4.15e-01 94.8% 100.0%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.52 44.0 3.50e-01 100.0% 60.1%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.95e-01 98.7% 74.5%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.88e-01 87.0% 73.4%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 4.05e-01 97.4% 98.9%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.50 39.0 3.47e-01 83.1% 82.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625247 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.73 65.0 5.79e-01 98.7% 88.2%
5048803 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.72 52.0 3.31e-01 75.3% 33.7%
4999447 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.71 53.0 3.63e-01 80.5% 46.8%
3587732 9.6.1.0 beta barrels › Lipocalins/Streptavidin › Staphostatin › Staphostatin 0.71 57.0 5.05e-01 87.0% 92.7%
1563689 3304.1.1.2 a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.69 49.0 4.08e-01 72.7% 61.5%
4927158 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 48.0 2.89e-01 71.4% 71.6%
3629627 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.69 54.0 5.46e-01 100.0% 86.7%
4225063 3840.1.1.2 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.68 60.0 5.35e-01 100.0% 80.0%
4970968 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.68 58.0 5.09e-01 93.5% 76.1%
4951171 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.67 46.0 4.81e-01 74.0% 77.1%
3749834 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.67 45.0 5.08e-01 90.9% 98.2%
3267885 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.66 50.0 4.18e-01 81.8% 57.8%
3168452 331.10.2.3 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.66 55.0 5.09e-01 97.4% 95.2%
3239519 4099.1.1.29 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 0.65 56.0 4.58e-01 97.4% 69.0%
3248607 206.1.2.2 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K 0.65 47.0 3.10e-01 76.6% 85.1%
4029890 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.65 44.0 2.90e-01 70.1% 91.6%
4023269 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 54.0 4.92e-01 97.4% 92.7%
4187379 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 49.0 4.20e-01 81.8% 74.2%
4797890 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.64 47.0 4.56e-01 80.5% 70.6%
4971247 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.63 50.0 4.98e-01 92.2% 83.7%
4946840 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 48.0 4.23e-01 81.8% 59.1%
4115428 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.63 49.0 3.77e-01 84.4% 81.1%
5000056 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 48.0 4.17e-01 81.8% 71.7%
4003932 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.63 54.0 4.67e-01 96.1% 93.3%
3798224 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.63 52.0 4.13e-01 90.9% 64.5%
5045322 331.6.1.0 a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain 0.62 51.0 4.38e-01 98.7% 56.0%
3742045 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.62 42.0 3.60e-01 71.4% 76.2%
4231809 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.62 44.0 2.75e-01 76.6% 25.7%
3252765 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.61 47.0 3.90e-01 81.8% 73.3%
3177260 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.61 50.0 3.58e-01 89.6% 63.8%
3632777 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 49.0 3.65e-01 89.6% 50.5%
4937428 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.61 49.0 3.94e-01 85.7% 84.8%
3585414 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.61 53.0 4.80e-01 100.0% 90.0%
5073723 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 4.07e-01 81.8% 72.3%
3387108 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.61 44.0 3.64e-01 76.6% 43.5%
5047213 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 4.00e-01 81.8% 54.8%
3972685 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 50.0 4.05e-01 92.2% 72.7%
3283564 881.1.1.26 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF7373 0.60 50.0 3.72e-01 92.2% 81.5%
3760199 331.2.1.6 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › Med14_RM8 0.60 50.0 4.70e-01 97.4% 93.0%
4999507 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.60 44.0 4.57e-01 93.5% 85.7%
4993189 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 42.0 4.58e-01 74.0% 96.7%
3667081 12.1.1.36 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GHD 0.60 40.0 4.10e-01 70.1% 90.7%
4018988 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.59 46.0 3.90e-01 87.0% 84.3%
3495285 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.59 49.0 3.97e-01 94.8% 47.3%
3576228 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.59 45.0 4.28e-01 83.1% 79.3%
1100 10.1.1.32 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.59 44.0 3.31e-01 80.5% 45.7%
5004871 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.59 49.0 4.66e-01 90.9% 78.9%
3964888 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 52.0 3.80e-01 100.0% 56.2%
3735632 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 46.0 3.33e-01 89.6% 38.3%
3230503 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 47.0 3.49e-01 88.3% 47.4%
3228083 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 40.0 2.89e-01 75.3% 23.8%
4978135 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 43.0 3.55e-01 81.8% 45.5%
3687869 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 48.0 3.87e-01 93.5% 57.3%
3231343 77.1.1.10 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.56 38.0 3.27e-01 74.0% 41.5%
4962147 2003.1.1.391 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA_C3 0.56 49.0 3.23e-01 100.0% 82.8%
3598679 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.54 42.0 3.27e-01 89.6% 72.7%
5047049 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 46.0 2.73e-01 100.0% 19.7%
3278853 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 38.0 4.12e-01 94.8% 96.9%
3642653 12.1.1.36 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GHD 0.51 40.0 4.11e-01 90.9% 98.7%
3217555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.50 36.0 2.59e-01 77.9% 23.5%