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DQ499600.1__ABF57541.1__X__00087

Bact-Vir

DQ499600.1__ABF57541.1__X__00087

Identity

Accession:
DQ499600 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-85
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.77 57.0 4.01e-01 79.7% 28.9%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.75 51.0 3.14e-01 71.2% 22.6%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.73 54.0 3.88e-01 79.7% 73.1%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.72 53.0 3.77e-01 79.7% 71.7%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.72 52.0 3.35e-01 78.0% 76.1%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.71 53.0 4.13e-01 79.7% 53.2%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.70 52.0 3.69e-01 79.7% 31.3%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.70 56.0 4.89e-01 88.1% 100.0%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 52.0 3.81e-01 79.7% 71.4%
1zt4C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.70 52.0 3.67e-01 79.7% 72.1%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 48.0 3.59e-01 72.9% 72.9%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 3.49e-01 72.9% 68.9%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.67 50.0 3.17e-01 81.4% 19.2%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.67 49.0 3.19e-01 79.7% 42.3%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 49.0 4.24e-01 79.7% 72.7%
5ksdA04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.65 47.0 3.60e-01 79.7% 60.1%
5ih0A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 48.0 4.10e-01 79.7% 71.0%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 50.0 3.28e-01 88.1% 53.8%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.64 47.0 3.94e-01 79.7% 64.8%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 54.0 4.03e-01 94.9% 77.8%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 44.0 2.80e-01 71.2% 90.4%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 53.0 3.27e-01 94.9% 56.4%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 3.75e-01 96.6% 71.0%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 44.0 2.79e-01 79.7% 18.3%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.23e-01 94.9% 85.2%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 3.60e-01 100.0% 43.3%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 47.0 3.06e-01 88.1% 92.7%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 45.0 3.97e-01 79.7% 61.4%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 48.0 3.58e-01 93.2% 47.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.60 53.0 4.02e-01 100.0% 50.0%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.60 51.0 3.74e-01 100.0% 58.8%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.60 41.0 3.63e-01 88.1% 48.8%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 43.0 2.97e-01 78.0% 32.4%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.59 46.0 4.03e-01 88.1% 85.1%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.59 46.0 2.89e-01 91.5% 27.3%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.59 44.0 2.62e-01 83.1% 10.8%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.56 41.0 3.86e-01 78.0% 97.3%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 40.0 2.81e-01 74.6% 46.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.30e-01 100.0% 93.6%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 43.0 3.64e-01 88.1% 99.1%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 41.0 3.66e-01 79.7% 88.6%
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 40.0 3.28e-01 76.3% 93.7%
3a5vA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.47e-01 78.0% 83.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 3.70e-01 74.6% 65.2%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 43.0 2.97e-01 94.9% 43.9%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 45.0 2.90e-01 100.0% 91.9%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 46.0 3.87e-01 100.0% 68.2%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 38.0 3.48e-01 79.7% 83.0%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.66e-01 88.1% 77.4%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 39.0 2.62e-01 86.4% 29.7%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 38.0 3.39e-01 81.4% 72.3%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 41.0 3.28e-01 98.3% 83.2%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3394354 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.83 63.0 5.18e-01 79.7% 79.0%
3480412 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.83 63.0 5.38e-01 79.7% 86.7%
3998439 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.83 61.0 5.16e-01 78.0% 75.8%
3217309 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.82 60.0 5.17e-01 78.0% 83.3%
3511988 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.81 61.0 5.23e-01 79.7% 85.6%
3927330 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.76 56.0 4.96e-01 78.0% 88.2%
4165617 865.1.1.0 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.76 58.0 4.50e-01 81.4% 84.0%
3238369 12.1.1.88 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5386 0.75 56.0 5.86e-01 79.7% 94.3%
3301044 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.74 50.0 3.35e-01 74.6% 20.0%
5075886 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.74 52.0 4.95e-01 74.6% 94.3%
3252050 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.73 54.0 3.62e-01 78.0% 74.3%
3228776 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 53.0 3.37e-01 79.7% 17.3%
3906634 5.1.4.382 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF1899, ANAPC4_WD40, WD40_4 0.71 51.0 3.02e-01 74.6% 20.0%
3802207 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.71 58.0 3.59e-01 88.1% 87.6%
3887495 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.70 48.0 3.82e-01 71.2% 43.5%
3421470 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.70 51.0 3.18e-01 78.0% 68.4%
3231343 77.1.1.10 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.69 48.0 3.77e-01 76.3% 33.8%
5061430 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 47.0 3.13e-01 74.6% 91.1%
3400053 206.1.1.98 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1, APH 0.67 48.0 3.17e-01 76.3% 90.4%
4677581 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 48.0 3.09e-01 78.0% 44.2%
3761968 233.1.1.5 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_2 0.66 48.0 3.50e-01 79.7% 73.7%
3709245 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 52.0 4.57e-01 86.4% 58.8%
3707862 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.66 50.0 4.55e-01 83.1% 77.5%
4929797 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.66 49.0 4.94e-01 78.0% 96.6%
5072132 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.65 58.0 5.18e-01 96.6% 75.0%
3490491 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.65 44.0 3.82e-01 71.2% 54.7%
3667806 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 48.0 3.25e-01 79.7% 48.9%
3339690 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.65 50.0 3.87e-01 83.1% 61.5%
3587919 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.65 47.0 2.94e-01 79.7% 19.1%
3365419 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.64 52.0 3.94e-01 89.8% 95.0%
3978865 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.64 55.0 3.49e-01 100.0% 17.9%
3703649 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.64 48.0 4.44e-01 83.1% 73.8%
5019488 5090.1.1.6 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.64 53.0 3.93e-01 91.5% 68.0%
3579466 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.64 45.0 4.67e-01 74.6% 92.7%
3230503 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 50.0 3.56e-01 88.1% 33.7%
3995113 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.63 44.0 3.78e-01 72.9% 57.9%
4025506 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.63 51.0 3.06e-01 88.1% 64.6%
4017127 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 49.0 3.23e-01 91.5% 91.8%
5012193 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 55.0 3.72e-01 100.0% 95.2%
3987333 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.61 45.0 2.85e-01 79.7% 88.4%
5019856 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 42.0 3.82e-01 76.3% 85.9%
3783252 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 2.99e-01 89.8% 23.0%
1097232 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.59 46.0 3.92e-01 88.1% 75.7%
3421332 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 3.22e-01 79.7% 60.6%
3231719 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 48.0 4.18e-01 91.5% 61.1%
2771836 5084.1.1.3 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › MSP 0.59 50.0 3.87e-01 100.0% 77.8%
1563345 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.59 44.0 2.62e-01 83.1% 10.8%
3392759 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 52.0 3.20e-01 100.0% 25.2%
4182291 223.1.1.5 a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA 0.58 49.0 3.25e-01 96.6% 97.6%
3408433 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.57 47.0 3.20e-01 100.0% 71.0%
1164615 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.56 41.0 3.80e-01 78.0% 92.3%
3237828 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.56 46.0 3.85e-01 94.9% 82.7%
4943586 243.6.1.12 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.55 48.0 4.42e-01 100.0% 80.0%
3181119 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.55 43.0 2.60e-01 88.1% 30.6%
3618450 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 46.0 3.96e-01 96.6% 95.0%
390390 12.1.1.32 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_2_C 0.55 41.0 3.49e-01 83.1% 66.3%
3624850 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.54 46.0 3.92e-01 100.0% 84.8%
None 0.54 44.0 2.78e-01 98.3% 15.8%
3973549 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 42.0 2.83e-01 96.6% 31.9%
3699300 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 42.0 2.59e-01 94.9% 49.3%
1031143 6043.1.1.3 a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.53 47.0 4.37e-01 100.0% 82.4%
4354219 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.52 36.0 3.03e-01 72.9% 91.0%
4041376 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 41.0 3.80e-01 93.2% 78.8%
3536489 331.9.1.5 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.50 41.0 3.47e-01 94.9% 62.9%
D2 medium residues 86-147
PDB