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DQ500118.1__ABF71296.1__RM163_045__00045
Bact-VirDQ500118.1__ABF71296.1__RM163_045__00045
Identity
- Accession:
- DQ500118 ↗
- Kingdom:
- phage
Quality
66.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-24_37-71
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 34.0 | 2.97e-01 | 77.6% | 33.3% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.59 | 40.0 | 3.89e-01 | 84.5% | 62.1% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 46.0 | 3.77e-01 | 86.2% | 92.7% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 36.0 | 3.23e-01 | 81.0% | 43.8% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 42.0 | 3.53e-01 | 84.5% | 86.8% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 41.0 | 3.50e-01 | 82.8% | 96.1% |
| 3n54B03 | 3.30.300.210 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 | 0.55 | 44.0 | 3.37e-01 | 89.7% | 37.8% |
| 6cnhA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 33.0 | 2.99e-01 | 84.5% | 42.5% |
| 1ggpA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.55 | 43.0 | 3.23e-01 | 98.3% | 33.6% |
| 1nh2D02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.55 | 33.0 | 3.57e-01 | 70.7% | 72.9% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 2.72e-01 | 100.0% | 26.2% |
| 3kyhC01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 43.0 | 2.87e-01 | 91.4% | 62.1% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.53 | 32.0 | 3.40e-01 | 72.4% | 68.0% |
| 2eeiA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 36.0 | 3.02e-01 | 70.7% | 56.6% |
| 1dlcA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.52 | 41.0 | 2.98e-01 | 94.8% | 78.2% |
| 5aj3P00 | 3.30.1320.10 | Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 | 0.52 | 39.0 | 3.19e-01 | 93.1% | 41.0% |
| 2qtsA02 | 2.60.470.10 | Mainly Beta › Sandwich › Acid-sensing ion channels like fold › Acid-sensing ion channels like domains | 0.50 | 37.0 | 2.80e-01 | 86.2% | 91.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943413 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.62 | 44.0 | 4.79e-01 | 87.9% | 100.0% |
| 4988038 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 46.0 | 3.74e-01 | 84.5% | 91.7% |
| 4375039 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.59 | 44.0 | 4.45e-01 | 87.9% | 80.0% |
| 177953 | 2.1.1.68 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C | 0.58 | 44.0 | 3.41e-01 | 87.9% | 76.2% |
| 5080743 | 2007.1.1.24 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DUF4350 | 0.58 | 44.0 | 3.05e-01 | 86.2% | 51.5% |
| 3287532 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 45.0 | 3.87e-01 | 89.7% | 88.0% |
| 5052888 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 45.0 | 3.58e-01 | 89.7% | 47.2% |
| 3284078 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.57 | 41.0 | 3.22e-01 | 79.3% | 92.6% |
| 4991187 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 45.0 | 3.92e-01 | 91.4% | 55.8% |
| 3439920 | 4.1.1.336 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7699 | 0.55 | 42.0 | 3.31e-01 | 89.7% | 44.1% |
| 3265716 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 43.0 | 3.80e-01 | 89.7% | 95.6% |
| 3635381 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 41.0 | 2.71e-01 | 82.8% | 60.8% |
| 3838288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 44.0 | 3.58e-01 | 91.4% | 75.7% |
| 4001295 | 5.1.4.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 | 0.54 | 37.0 | 2.38e-01 | 96.6% | 12.2% |
| 3425790 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.53 | 36.0 | 3.22e-01 | 74.1% | 63.2% |
| 4339016 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.53 | 40.0 | 3.45e-01 | 98.3% | 48.6% |
| 4880562 | 5.1.3.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 | 0.53 | 45.0 | 2.71e-01 | 100.0% | 38.0% |
| 3473720 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.53 | 40.0 | 3.31e-01 | 84.5% | 90.9% |
| 3579807 | 101.1.2.709 ↗ | alpha arrays › HTH › HTH › winged helix domain › Hexokinase_1 | 0.53 | 38.0 | 3.22e-01 | 94.8% | 45.0% |
| 3270749 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.53 | 38.0 | 3.59e-01 | 100.0% | 61.3% |
| 3349316 | 10.12.1.38 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO | 0.52 | 35.0 | 2.30e-01 | 70.7% | 50.2% |
| 4087511 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.52 | 41.0 | 3.43e-01 | 91.4% | 80.0% |
| 4264144 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.52 | 41.0 | 3.57e-01 | 94.8% | 98.1% |
| 4020093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 39.0 | 3.09e-01 | 86.2% | 40.0% |
| 3260945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 34.0 | 3.42e-01 | 70.7% | 68.3% |
| 3385723 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.50 | 39.0 | 3.48e-01 | 98.3% | 55.8% |