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DQ500118.1__ABF71331.1__RM163_078__00078

Bact-Vir

DQ500118.1__ABF71331.1__RM163_078__00078

Identity

Accession:
DQ500118 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_16-3

TaxID: 10704

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-168
PDB
Domain cluster: rep: OQ957557.1__WKV24423.1__X__00014__D1-167
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.67 41.0 4.37e-01 75.4% 69.9%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 37.0 4.74e-01 90.8% 100.0%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 37.0 4.49e-01 85.2% 92.2%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 39.0 4.54e-01 85.9% 92.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 39.0 4.49e-01 90.8% 91.3%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.82e-01 98.6% 94.8%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 29.0 3.10e-01 80.3% 51.2%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 35.0 3.98e-01 90.1% 77.1%
4qclA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 33.0 3.98e-01 85.9% 94.2%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 27.0 2.91e-01 79.6% 53.3%
3c8iA00 2.40.410.10 Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily 0.53 37.0 3.89e-01 93.7% 78.7%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 4.02e-01 92.3% 92.2%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 20.0 2.86e-01 82.4% 72.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 27.0 3.55e-01 97.9% 93.2%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 4.20e-01 78.2% 97.2%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.88e-01 93.0% 86.8%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 38.0 4.22e-01 100.0% 95.6%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 38.0 4.11e-01 77.5% 95.9%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970846 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 37.0 4.79e-01 83.1% 82.5%
4602887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 38.0 5.10e-01 85.2% 94.6%
3716770 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.71 36.0 4.15e-01 83.8% 65.7%
3281968 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 39.0 4.70e-01 88.0% 89.5%
5046475 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.64 43.0 4.66e-01 90.8% 80.0%
5013672 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 31.0 4.33e-01 87.3% 98.5%
3909994 2.3.1.1 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.64 46.0 4.36e-01 95.8% 61.8%
4591470 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.63 39.0 3.82e-01 76.1% 57.3%
5036880 330.1.1.35 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.62 30.0 4.19e-01 81.0% 94.3%
4024062 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 33.0 4.31e-01 84.5% 98.6%
6390 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.60 29.0 3.14e-01 79.6% 52.1%
3593482 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.59 39.0 4.54e-01 83.1% 94.0%
3473720 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 39.0 4.37e-01 85.9% 88.2%
4113222 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 39.0 3.94e-01 74.6% 68.6%
3931232 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 37.0 3.97e-01 90.8% 74.4%
3871082 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 39.0 3.91e-01 70.4% 84.0%
3943546 2.1.1.136 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3577 0.57 41.0 4.55e-01 85.9% 96.4%
3998954 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.55 34.0 3.58e-01 97.2% 66.9%
5074618 304.48.1.31 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Cas10-Cmr2_palm2 0.55 42.0 3.22e-01 79.6% 40.0%
4934871 2.1.1.368 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arcadin_1 0.54 41.0 4.62e-01 84.5% 100.0%
3599571 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 4.08e-01 85.2% 87.8%
3265334 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 28.0 3.09e-01 76.8% 61.8%
3702502 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.53 35.0 4.05e-01 90.8% 95.0%
4428249 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 39.0 3.92e-01 99.3% 77.9%
4470749 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 43.0 4.39e-01 99.3% 91.9%
3476371 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 38.0 3.83e-01 76.1% 75.9%
3583426 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 39.0 3.99e-01 79.6% 94.3%
3876143 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 39.0 3.98e-01 99.3% 82.2%
3618300 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 38.0 4.02e-01 77.5% 86.2%
4028698 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 37.0 4.09e-01 99.3% 92.1%
4355652 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.51 38.0 3.80e-01 78.2% 79.3%
5054962 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 39.0 4.28e-01 100.0% 96.7%
3275390 2.1.1.105 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.50 37.0 4.00e-01 89.4% 90.8%