Back to structures

DQ535032.1__ABG21575.1__KSY1p033__00032

Bact-Vir

DQ535032.1__ABG21575.1__KSY1p033__00032

Identity

Accession:
DQ535032 ↗
Kingdom:
phage

Quality

58.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-80
PDB
D2 high residues 545-633
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.70 47.0 5.16e-01 87.6% 86.1%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.70 50.0 5.15e-01 75.3% 79.1%
3tqgB01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.66 61.0 4.36e-01 100.0% 97.1%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 47.0 3.98e-01 75.3% 89.3%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.65 49.0 4.34e-01 79.8% 69.0%
6oh6A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.65 56.0 3.91e-01 98.9% 90.7%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.65 54.0 5.02e-01 92.1% 83.2%
1kxpD02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 39.0 3.99e-01 91.0% 60.2%
2ewfA03 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.64 44.0 3.29e-01 70.8% 49.3%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 50.0 5.14e-01 94.4% 91.6%
1oj7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.63 49.0 3.81e-01 84.3% 72.5%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 55.0 5.57e-01 94.4% 98.9%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.62 48.0 4.53e-01 84.3% 69.4%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.62 47.0 3.09e-01 83.1% 56.0%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 50.0 5.21e-01 98.9% 98.8%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 46.0 4.39e-01 82.0% 90.8%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 48.0 4.13e-01 84.3% 92.9%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 39.0 4.07e-01 98.9% 69.4%
1x9fA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 47.0 3.98e-01 83.1% 93.9%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 48.0 4.70e-01 87.6% 80.4%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 35.0 3.34e-01 94.4% 47.3%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 45.0 3.88e-01 80.9% 95.7%
3q2eA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 48.0 4.59e-01 88.8% 88.8%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 47.0 4.11e-01 88.8% 97.9%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 45.0 3.92e-01 85.4% 96.0%
3w0lD02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.58 43.0 2.90e-01 78.7% 68.1%
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.58 47.0 4.34e-01 88.8% 75.4%
3gyuA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 50.0 3.73e-01 100.0% 77.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.57 43.0 3.99e-01 82.0% 89.7%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 3.97e-01 89.9% 87.3%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.57 43.0 4.39e-01 82.0% 83.5%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 44.0 4.27e-01 86.5% 74.3%
1vbiA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.57 45.0 4.35e-01 87.6% 96.1%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.57 43.0 4.35e-01 84.3% 89.1%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.56 47.0 4.13e-01 98.9% 60.3%
3tdoA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.56 48.0 3.55e-01 98.9% 95.7%
2hroA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.56 47.0 4.20e-01 94.4% 84.4%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.55 37.0 3.18e-01 98.9% 42.3%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.55 42.0 4.41e-01 82.0% 92.3%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 39.0 3.51e-01 74.2% 82.3%
1z2iA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.55 45.0 4.48e-01 92.1% 93.5%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.19e-01 88.8% 84.5%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 4.09e-01 97.8% 76.6%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.54 46.0 3.61e-01 98.9% 60.8%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 40.0 3.10e-01 77.5% 42.1%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 48.0 3.89e-01 97.8% 68.1%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 31.0 3.61e-01 98.9% 81.0%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 3.97e-01 97.8% 69.7%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.53 38.0 4.23e-01 82.0% 100.0%
1wwmA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.52 45.0 3.67e-01 100.0% 83.9%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 41.0 3.98e-01 85.4% 95.0%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.51 39.0 3.28e-01 80.9% 88.7%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.51 39.0 3.67e-01 84.3% 82.0%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.50 34.0 3.89e-01 94.4% 96.9%
6whbA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 39.0 2.80e-01 85.4% 30.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4012566 633.24.1.3 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF6594 0.73 52.0 5.56e-01 74.2% 90.7%
5027214 604.39.1.3 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS 0.72 64.0 5.12e-01 98.9% 88.0%
3219291 188.1.1.0 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.71 54.0 3.95e-01 80.9% 38.7%
3957614 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.71 58.0 4.26e-01 87.6% 81.8%
3925909 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.70 60.0 5.81e-01 95.5% 90.0%
4967993 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.70 58.0 6.03e-01 94.4% 100.0%
3786761 551.1.1.1 alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.69 49.0 4.26e-01 75.3% 65.0%
3511298 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.68 54.0 4.27e-01 86.5% 82.6%
3925558 551.1.1.1 alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.67 48.0 4.12e-01 75.3% 61.4%
3937339 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.67 50.0 4.09e-01 78.7% 88.5%
4347817 1075.5.1.2 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ 0.66 47.0 3.58e-01 74.2% 93.8%
3511626 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.66 52.0 4.26e-01 85.4% 92.9%
3231357 188.1.1.0 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.66 50.0 3.73e-01 80.9% 36.2%
3513623 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.65 52.0 4.26e-01 86.5% 89.1%
3513249 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.65 51.0 4.16e-01 85.4% 87.6%
3282674 371.1.1.3 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_3 0.64 55.0 5.37e-01 96.6% 90.0%
3486215 133.1.1.0 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.64 56.0 4.36e-01 98.9% 49.5%
3789620 7563.1.1.0 a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related 0.63 54.0 3.70e-01 95.5% 31.4%
3233966 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 52.0 4.26e-01 91.0% 95.8%
3221654 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.62 48.0 3.98e-01 84.3% 90.9%
3274858 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.62 46.0 3.61e-01 79.8% 92.3%
3999743 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.62 50.0 4.19e-01 89.9% 93.8%
4065938 604.39.1.3 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS 0.61 53.0 4.34e-01 98.9% 94.3%
3255346 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.60 48.0 4.29e-01 87.6% 76.2%
4376682 604.39.1.26 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › 5TM-5TMR_LYT 0.59 52.0 4.18e-01 97.8% 57.7%
3518320 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 37.0 3.45e-01 100.0% 50.9%
3216139 188.1.1.0 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.59 50.0 3.95e-01 100.0% 80.5%
3215086 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.59 51.0 3.81e-01 100.0% 54.6%
3995656 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 50.0 4.23e-01 98.9% 66.9%
2966548 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.58 51.0 4.08e-01 100.0% 49.2%
3239895 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.58 50.0 3.75e-01 100.0% 65.8%
3417703 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.58 46.0 3.80e-01 87.6% 60.6%
3794263 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 49.0 4.05e-01 97.8% 64.0%
3354773 109.4.1.27 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 0.58 44.0 3.53e-01 82.0% 41.3%
3216590 188.1.1.0 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.57 49.0 3.78e-01 100.0% 73.9%
3642678 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.57 49.0 4.04e-01 96.6% 70.0%
3477758 601.1.2.2 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ 0.57 46.0 3.85e-01 93.3% 95.4%
3284785 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 46.0 4.38e-01 92.1% 78.2%
3602825 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.56 44.0 3.86e-01 83.1% 59.2%
3230512 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 48.0 3.96e-01 98.9% 64.0%
3501178 3755.4.1.31 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Fry_C 0.56 43.0 3.36e-01 84.3% 76.6%
3173272 633.15.1.1 alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › BCDHK_Adom3 0.56 48.0 3.96e-01 98.9% 90.0%
3495156 109.58.1.1 alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.55 38.0 3.94e-01 79.8% 76.5%
3605745 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.55 39.0 3.24e-01 74.2% 66.1%
3836802 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.55 48.0 3.93e-01 98.9% 80.0%
5073852 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.55 43.0 3.91e-01 87.6% 75.2%
4023316 3755.4.1.5 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Dynactin 0.53 43.0 3.44e-01 87.6% 72.8%
3609900 4351.1.1.1 alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.53 45.0 3.41e-01 100.0% 87.8%
3289554 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.53 45.0 4.16e-01 97.8% 81.7%
3318287 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.53 44.0 3.63e-01 96.6% 69.4%
4478498 3236.1.1.12 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Cons_hypoth698 0.53 43.0 2.91e-01 88.8% 87.1%
4372538 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 46.0 3.98e-01 100.0% 64.6%
3845930 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.53 42.0 3.68e-01 88.8% 95.7%
3673192 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 37.0 3.04e-01 73.0% 67.6%
3256138 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.52 36.0 2.72e-01 70.8% 76.0%
3833042 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.51 43.0 3.56e-01 95.5% 74.7%
3187449 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.51 44.0 3.76e-01 95.5% 88.3%
D3 medium residues 262-345
PDB
D4 medium residues 634-820
PDB