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DamX_superfamily_incomplete_domain
Euk-VirPandoravirus_salinus
DamX_superfamily_incomplete_domain__YP_008438683__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008438683 ↗
- Protein ID:
- DamX_superfamily_incomplete_domain
- Kingdom:
- euk
Quality
44.4
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 147-216
D2
medium
residues 217-358
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 39.0 | 4.16e-01 | 71.8% | 68.9% |
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.58 | 38.0 | 4.27e-01 | 99.3% | 88.5% |
| 1i4dA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.58 | 40.0 | 3.70e-01 | 71.8% | 84.0% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.57 | 32.0 | 3.40e-01 | 84.5% | 58.8% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.57 | 32.0 | 3.50e-01 | 71.8% | 65.8% |
| 7r0kA01 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.56 | 31.0 | 3.56e-01 | 97.2% | 71.3% |
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.55 | 39.0 | 3.46e-01 | 70.4% | 78.0% |
| 4nqiD00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.54 | 38.0 | 3.21e-01 | 70.4% | 73.7% |
| 2x0cA01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.53 | 42.0 | 3.93e-01 | 83.1% | 86.0% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 37.0 | 3.74e-01 | 72.5% | 86.8% |
| 1wp9B03 | 1.20.1320.20 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain | 0.51 | 33.0 | 3.46e-01 | 79.6% | 70.8% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.50 | 29.0 | 3.70e-01 | 83.8% | 100.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3448936 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.65 | 38.0 | 3.59e-01 | 73.9% | 47.4% |
| 3654776 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 37.0 | 3.63e-01 | 85.9% | 52.9% |
| 3419359 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.61 | 36.0 | 3.76e-01 | 72.5% | 60.7% |
| 3513855 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.61 | 37.0 | 3.73e-01 | 71.1% | 58.6% |
| 4246144 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 31.0 | 3.96e-01 | 83.8% | 85.0% |
| 3733145 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 35.0 | 3.59e-01 | 72.5% | 58.6% |
| 3426020 | 611.7.1.15 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Rx_N | 0.58 | 45.0 | 4.69e-01 | 81.7% | 100.0% |
| 3649632 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.56 | 43.0 | 4.37e-01 | 80.3% | 90.7% |
| 3684868 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.56 | 44.0 | 4.48e-01 | 82.4% | 92.9% |
| 4393144 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.56 | 42.0 | 3.61e-01 | 79.6% | 74.8% |
| 3726746 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.54 | 41.0 | 4.14e-01 | 81.0% | 97.2% |
| 3934011 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 32.0 | 2.87e-01 | 90.1% | 40.5% |
| 3998828 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 42.0 | 4.27e-01 | 88.0% | 91.4% |
| 4937529 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.50 | 30.0 | 3.52e-01 | 71.1% | 85.0% |