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Desmoplakin

Euk-Vir

Perigonia_lusca_single_nucleopolyhedrovirus

Desmoplakin__YP_009165668__Perigonia_lusca_single_nucleopolyhedrovirus__1675865

Identity

Accession:
YP_009165668 ↗
Protein ID:
Desmoplakin
Kingdom:
euk

Quality

68.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Perigonia_lusca_single_nucleopolyhedrovirus

TaxID: 1675865

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-59
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06771.17 best Desmo_N 53.2 4.10e-14 100.0% 61.6%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.84 65.0 5.67e-01 83.3% 59.5%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.73 53.0 4.99e-01 75.9% 64.1%
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.72 57.0 5.28e-01 88.9% 70.0%
2o35A00 1.10.3340.10 Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like 0.70 50.0 4.33e-01 74.1% 55.7%
3vr4B04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.69 55.0 4.04e-01 90.7% 49.7%
2auaA02 1.10.3800.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylation fold › ADP-ribosylation domain 0.64 51.0 4.30e-01 88.9% 53.8%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 43.0 3.24e-01 92.6% 69.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3457079 605.1.1.150 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › IQ 0.82 64.0 5.20e-01 85.2% 50.0%
3213526 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.76 61.0 4.80e-01 85.2% 56.2%
2443837 160.1.1.4 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C 0.75 55.0 3.88e-01 81.5% 26.9%
3925617 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.75 62.0 5.24e-01 88.9% 68.2%
3618098 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.74 64.0 4.22e-01 100.0% 27.4%
3529707 4.1.1.453 ↗ beta barrels › SH3 › SH3 › SH3 › HR1_TOCA 0.73 59.0 4.85e-01 87.0% 63.2%
3859004 5046.1.1.0 ↗ extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b 0.70 56.0 4.42e-01 88.9% 41.7%
4145892 3949.1.1.2 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › DUF3603 0.65 46.0 3.87e-01 74.1% 84.4%
4098259 110.1.1.13 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DUF3603 0.64 45.0 3.67e-01 72.2% 57.1%
4940749 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.64 46.0 2.91e-01 81.5% 14.5%
4540906 101.1.4.82 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF3603 0.61 45.0 3.85e-01 81.5% 84.0%
D2 medium residues 417-478
PDB
Domain cluster: representative
D3 medium residues 631-655_657-700
PDB
Domain cluster: representative