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DnaJ_domain_protein

Euk-Vir

Perigonia_lusca_single_nucleopolyhedrovirus

DnaJ_domain_protein__YP_009165656__Perigonia_lusca_single_nucleopolyhedrovirus__1675865

Identity

Accession:
YP_009165656 ↗
Protein ID:
DnaJ_domain_protein
Kingdom:
euk

Quality

71.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Perigonia_lusca_single_nucleopolyhedrovirus

TaxID: 1675865

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 64-158
PDB
Domain cluster: rep: baculovirus_DnaJ_domain_protein__YP_010086530__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D79-185
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsaA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.86 63.0 6.18e-01 86.3% 71.3%
1wjzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.77 58.0 5.84e-01 88.4% 78.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.76 56.0 5.21e-01 76.8% 86.3%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.76 59.0 5.41e-01 81.1% 76.5%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.73 52.0 4.86e-01 73.7% 87.7%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.71 38.0 4.82e-01 71.6% 89.3%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.71 52.0 4.69e-01 75.8% 72.4%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.70 53.0 4.79e-01 81.1% 81.5%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 47.0 3.95e-01 71.6% 74.9%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.69 50.0 5.45e-01 76.8% 94.9%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 53.0 4.83e-01 83.2% 74.2%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 44.0 3.85e-01 71.6% 43.8%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 39.0 4.28e-01 71.6% 72.0%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.66 38.0 4.35e-01 73.7% 77.9%
3ismC01 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.66 47.0 4.04e-01 74.7% 72.7%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 47.0 4.37e-01 74.7% 74.6%
1k90B03 1.20.140.60 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.66 47.0 4.39e-01 73.7% 68.7%
1tmxB00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.65 41.0 2.88e-01 72.6% 20.6%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.63 45.0 4.25e-01 74.7% 81.7%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 45.0 4.34e-01 75.8% 79.6%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.60 45.0 3.57e-01 81.1% 85.6%
3nnrA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 43.0 3.39e-01 74.7% 36.6%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.60 42.0 4.31e-01 72.6% 82.6%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 44.0 3.76e-01 76.8% 50.0%
4nuuB02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 4.01e-01 77.9% 85.4%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 40.0 3.62e-01 75.8% 64.2%
4rfsS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.54 44.0 3.62e-01 90.5% 73.3%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 37.0 3.57e-01 70.5% 65.5%
2xgcA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 42.0 3.79e-01 83.2% 69.5%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486313 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.88 60.0 6.42e-01 83.2% 78.8%
3191163 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.84 59.0 5.73e-01 83.2% 65.7%
3739640 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.84 58.0 5.48e-01 83.2% 60.9%
3319233 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.83 65.0 6.43e-01 97.9% 78.0%
3391940 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.82 58.0 6.51e-01 85.3% 92.0%
3737576 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.82 58.0 5.59e-01 85.3% 65.7%
4014187 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.82 59.0 5.63e-01 83.2% 64.5%
3694 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.77 58.0 5.84e-01 88.4% 78.7%
3263294 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.77 63.0 6.25e-01 86.3% 92.0%
3766956 622.4.1.22 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › FAM186A-B_N 0.75 49.0 4.52e-01 71.6% 52.5%
4958743 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 53.0 5.01e-01 74.7% 76.5%
3667265 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.72 64.0 5.44e-01 93.7% 71.0%
3576678 3567.1.1.130 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › ABC_membrane_2 0.72 52.0 4.55e-01 74.7% 86.4%
3630533 109.4.1.937 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_EDRF1 0.72 51.0 3.26e-01 73.7% 30.4%
3590438 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.72 60.0 5.42e-01 90.5% 83.8%
3599313 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 46.0 4.98e-01 75.8% 81.2%
3447420 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.69 55.0 4.75e-01 85.3% 77.9%
3874130 133.1.1.5 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › DH_Alsin 0.66 47.0 3.69e-01 74.7% 74.8%
5012283 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.66 42.0 3.51e-01 71.6% 37.0%
3197870 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 48.0 4.27e-01 76.8% 74.8%
3622515 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 44.0 4.65e-01 74.7% 77.6%
3708446 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 43.0 4.55e-01 75.8% 76.5%
4146693 603.1.1.104 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.64 49.0 3.30e-01 82.1% 35.7%
4080125 616.1.1.45 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › MIS13 0.63 42.0 4.53e-01 73.7% 80.0%
5054424 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.63 43.0 4.61e-01 70.5% 85.0%
3381159 3791.1.1.1 ↗ alpha arrays › EDS1-PAD4 (EP) domain › EDS1-PAD4 (EP) domain › EDS1-PAD4 (EP) domain › EDS1_EP 0.61 42.0 3.45e-01 70.5% 53.5%
3933449 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.60 41.0 4.21e-01 70.5% 80.0%
3688545 109.1.1.36 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N 0.53 46.0 3.47e-01 100.0% 50.6%
D2 medium residues 166-297
PDB
Domain cluster: rep: BJDP__YP_009250015__Urbanus_proteus_nucleopolyhedrovirus__1675866__D175-270
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cq0A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.71 47.0 5.39e-01 71.2% 87.4%
2mzqA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.70 49.0 5.64e-01 72.0% 95.0%
4uskA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.60 42.0 4.02e-01 71.2% 95.5%
3h7hB00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.56 38.0 4.38e-01 70.5% 100.0%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.52 48.0 4.28e-01 100.0% 88.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391205 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.76 54.0 6.29e-01 77.3% 100.0%
4026044 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.75 51.0 5.80e-01 74.2% 90.0%
4014083 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.75 53.0 4.47e-01 72.7% 57.3%
3884986 304.9.1.63 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_3 0.74 51.0 6.04e-01 76.5% 98.9%
3328431 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.74 51.0 6.00e-01 71.2% 98.9%
3494618 304.9.1.23 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 0.73 50.0 4.81e-01 70.5% 72.7%
3795979 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.73 50.0 5.82e-01 76.5% 96.8%
3626318 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.72 51.0 5.36e-01 75.0% 79.2%
3708801 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.72 50.0 4.78e-01 71.2% 86.0%
4146058 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.71 51.0 4.97e-01 72.7% 70.0%
4027544 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.70 50.0 5.19e-01 73.5% 81.6%
3834037 304.9.1.114 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, RRM_2 0.69 52.0 3.55e-01 77.3% 86.4%
3831232 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 50.0 5.48e-01 79.5% 90.9%
3518441 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 53.0 5.51e-01 80.3% 88.0%
3940164 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 47.0 4.88e-01 70.5% 76.0%
3707050 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.67 48.0 4.84e-01 72.7% 77.7%
3432967 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.67 52.0 4.42e-01 80.3% 99.5%
3321769 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 44.0 5.39e-01 72.0% 100.0%
3825733 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.66 47.0 5.41e-01 72.7% 100.0%
3339481 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 49.0 5.54e-01 77.3% 97.1%
4029866 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.63 46.0 3.90e-01 76.5% 46.7%
3792269 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 46.0 4.79e-01 80.3% 83.3%