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E104

Euk-Vir

Murid_betaherpesvirus_8

E104__YP_007016500__Murid_betaherpesvirus_8__1261657

Identity

Accession:: YP_007016500 ↗
Protein ID:: E104
Kingdom:: euk

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Muromegalovirus› Murid_betaherpesvirus_8

TaxID: 1261657

Cluster

View cluster (76 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-73_179-274

PDB

Domain cluster: rep: putative_viron_protein__NP_050255__Human_betaherpesvirus_6B__32604__D63-87_177-199_238-289

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	36.9	2.20e-09	84.0%	18.1%

D2 medium residues 74-132_147-178

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	67.3	1.40e-18	100.0%	20.1%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lynB00	1.20.150.10	Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein	0.60	40.0	3.71e-01	70.3%	56.5%
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	37.0	4.13e-01	81.3%	84.7%
2wgmA01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.54	39.0	4.09e-01	78.0%	85.4%
5dn6J00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.54	38.0	4.10e-01	82.4%	90.5%
4q4hA01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.54	42.0	2.92e-01	85.7%	25.5%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.53	39.0	4.20e-01	89.0%	97.3%
1wpaA01	6.10.140.340	Special › Helix non-globular › Helix Hairpins ›	0.53	37.0	3.67e-01	74.7%	76.8%
1y1uA01	1.20.1050.20	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain	0.51	36.0	2.88e-01	74.7%	40.5%
7eu3E01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	32.0	3.34e-01	74.7%	65.5%
2lm9A00	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	32.0	3.19e-01	85.7%	59.4%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3923798	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.62	42.0	3.11e-01	84.6%	26.8%
4842499	1128.1.1.1 ↗	alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR	0.61	41.0	3.86e-01	94.5%	56.8%
5055977	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.61	45.0	4.35e-01	84.6%	71.0%
4945528	140.1.1.11 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1	0.60	36.0	2.79e-01	81.3%	28.2%
5040843	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.58	44.0	4.34e-01	86.8%	76.8%
3050	102.3.1.1 ↗	alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha	0.57	34.0	3.48e-01	89.0%	58.2%
4018370	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.56	40.0	3.57e-01	74.7%	58.5%
3708789	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.53	36.0	3.62e-01	70.3%	70.5%
3477822	1147.1.1.1 ↗	alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL	0.53	37.0	3.36e-01	84.6%	53.6%
3247930	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.52	36.0	3.49e-01	72.5%	69.5%
3737296	192.2.1.18 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING	0.51	41.0	3.71e-01	89.0%	74.6%
4604091	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.51	35.0	3.43e-01	70.3%	70.0%
3598168	3755.1.1.0 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related	0.50	36.0	2.96e-01	74.7%	50.3%
5051446	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.50	43.0	3.75e-01	94.5%	95.7%

D3 medium residues 275-313_499-537

PDB

Domain cluster: rep: ORF43__YP_009173919__Felis_catus_gammaherpesvirus_1__1452540__D36-48_240-270_456-502

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	44.4	1.20e-11	55.1%	7.0%
PF01763.23	Herpes_UL6	51.1	1.10e-13	50.0%	6.8%

D4 medium residues 314-371

PDB

D5 medium residues 404-474

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	51.0	1.20e-13	100.0%	12.6%