←Back to structures

E1B_55K

Euk-Vir

Simian_adenovirus_16

E1B_55K__YP_009174142__Simian_adenovirus_16__1715778

Identity

Accession:: YP_009174142 ↗
Protein ID:: E1B_55K
Kingdom:: euk

Quality

78.4 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Simian_adenovirus_16

TaxID: 1715778

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 122-308

PDB

Domain cluster: rep: control_protein_E1B_55K__YP_002213767__Human_mastadenovirus_B__108098__D125-324

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01696.24 best	Adeno_E1B_55K	249.9	5.00e-74	100.0%	48.3%
PF13229.13	Beta_helix	29.1	1.00e-06	68.5%	63.3%

D2 medium residues 309-480

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01696.24 best	Adeno_E1B_55K	231.2	2.30e-68	100.0%	46.0%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1k8fA00	2.160.20.70	Mainly Beta › 3 Solenoid › Pectate Lyase C-like ›	0.72	53.0	5.58e-01	96.5%	82.8%
2f3lA00	2.160.20.80	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA	0.68	48.0	5.48e-01	94.2%	94.7%
5z9tA01	2.160.20.10	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like	0.65	60.0	4.27e-01	100.0%	67.3%
7chuA01	2.160.20.10	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like	0.63	58.0	4.46e-01	96.5%	59.7%
1vblA00	2.160.20.10	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like	0.63	59.0	4.37e-01	100.0%	67.8%
2yuhA01	2.160.20.70	Mainly Beta › 3 Solenoid › Pectate Lyase C-like ›	0.61	47.0	4.73e-01	100.0%	79.7%
6o38A04	2.60.120.1230	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	29.0	3.76e-01	81.4%	100.0%
1af0A01	2.150.10.10	Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal	0.52	48.0	4.27e-01	99.4%	76.7%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3974743	207.14.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A	0.72	42.0	5.27e-01	94.2%	97.0%
2512645	207.2.1.24 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chondroitinas_B	0.67	63.0	4.45e-01	100.0%	66.3%
4581394	207.6.1.2 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind,HCBP_related	0.62	48.0	4.61e-01	97.1%	70.5%
377410	207.2.1.1 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28	0.61	56.0	4.06e-01	96.5%	59.6%
1380293	207.6.1.1 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind	0.61	43.0	4.93e-01	72.1%	100.0%
3921234	207.2.1.70 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix	0.61	57.0	4.45e-01	98.3%	85.0%
1380294	207.6.1.1 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind	0.58	38.0	4.34e-01	89.5%	89.6%
3639076	208.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes	0.55	49.0	4.89e-01	95.9%	90.6%
4144650	207.11.1.1 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD	0.52	48.0	4.14e-01	100.0%	92.7%