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E1B_55K
Euk-VirOvine_adenovirus_8
E1B_55K__YP_010087254__Ovine_adenovirus_8__2601527
Identity
- Accession:
- YP_010087254 ↗
- Protein ID:
- E1B_55K
- Kingdom:
- euk
Quality
54.2
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Ovine_adenovirus_8
TaxID: 2601527
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 121-238
Domain cluster:
rep: large_T-antigen__YP_009246377__Bat_mastadenovirus_WIV10__1788432__D212-342
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01696.24 best | Adeno_E1B_55K | 144.4 | 5.40e-42 | 100.0% | 29.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6kbiA01 | 3.80.20.20 | Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain | 0.62 | 44.0 | 4.22e-01 | 73.7% | 82.1% |
| 4hwvB00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.59 | 52.0 | 3.50e-01 | 100.0% | 84.2% |
| 7d44C01 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.53 | 38.0 | 3.27e-01 | 72.9% | 92.1% |
| 1t5bB00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.51 | 36.0 | 3.10e-01 | 73.7% | 85.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2082632 | 207.2.1.5 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Adeno_E1B_55K | 0.80 | 60.0 | 4.16e-01 | 77.1% | 34.3% |
| 2783205 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.74 | 57.0 | 4.22e-01 | 80.5% | 43.6% |
| 3291881 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.70 | 54.0 | 3.94e-01 | 81.4% | 45.3% |
| 3699914 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.65 | 41.0 | 4.28e-01 | 94.1% | 69.5% |
| 3909298 | 1160.1.1.1 ↗ | beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N | 0.59 | 38.0 | 3.42e-01 | 92.4% | 45.9% |
| 3539089 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.53 | 48.0 | 3.72e-01 | 99.2% | 53.2% |
| 4029692 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.52 | 46.0 | 3.35e-01 | 100.0% | 63.2% |
| 4512437 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.50 | 44.0 | 3.46e-01 | 100.0% | 70.0% |
D2
medium
residues 239-332
Domain cluster:
rep: control_protein_E1B_55_kDa__YP_009109570__Simian_adenovirus_DM-2014__1560346__D234-315
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01696.24 best | Adeno_E1B_55K | 111.6 | 5.10e-32 | 100.0% | 24.0% |
| PF13229.13 | Beta_helix | 27.7 | 2.60e-06 | 100.0% | 75.3% |