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E1
Euk-VirCamelus_dromedarius_papillomavirus_2
E1__YP_004306475__Camelus_dromedarius_papillomavirus_2__996651
Identity
- Accession:
- YP_004306475 ↗
- Protein ID:
- E1
- Kingdom:
- euk
Quality
74.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Deltapapillomavirus›
Camelus_dromedarius_papillomavirus_2
TaxID: 996651
Cluster
View cluster (151 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 192-336
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20450.5 best | PPV_E1_DBD | 163.4 | 5.30e-48 | 93.1% | 95.7% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.99 | 95.0 | 9.55e-01 | 97.9% | 97.9% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.96 | 87.0 | 8.97e-01 | 97.9% | 97.8% |
| 2hw0A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.79 | 56.0 | 6.22e-01 | 77.9% | 90.4% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.77 | 50.0 | 6.13e-01 | 75.2% | 100.0% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.75 | 40.0 | 5.41e-01 | 73.8% | 100.0% |
| 3dkxA01 | 3.40.1310.30 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.73 | 55.0 | 5.72e-01 | 77.9% | 98.5% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.72 | 42.0 | 5.06e-01 | 77.2% | 87.4% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.71 | 58.0 | 6.05e-01 | 94.5% | 93.9% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.71 | 55.0 | 5.99e-01 | 80.0% | 99.2% |
| 3trgA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 42.0 | 5.15e-01 | 71.7% | 91.5% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 37.0 | 4.56e-01 | 73.1% | 85.1% |
| 4oj3B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 41.0 | 4.92e-01 | 71.7% | 90.5% |
| 2ia0B02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.68 | 43.0 | 5.11e-01 | 71.0% | 92.9% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.67 | 38.0 | 4.85e-01 | 73.8% | 100.0% |
| 4ch7A02 | 3.30.70.3460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 47.0 | 4.33e-01 | 73.1% | 89.8% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.66 | 49.0 | 4.44e-01 | 76.6% | 96.9% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 41.0 | 5.00e-01 | 83.4% | 100.0% |
| 3f44A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 48.0 | 4.27e-01 | 76.6% | 100.0% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.65 | 47.0 | 4.11e-01 | 73.1% | 76.2% |
| 2a10D00 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.65 | 44.0 | 5.11e-01 | 71.0% | 98.0% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 43.0 | 4.96e-01 | 81.4% | 94.2% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 42.0 | 4.82e-01 | 78.6% | 93.3% |
| 2ipiA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.63 | 44.0 | 3.68e-01 | 71.0% | 63.3% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 43.0 | 4.87e-01 | 79.3% | 94.3% |
| 1sjrA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 43.0 | 4.87e-01 | 77.9% | 94.4% |
| 3popA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.62 | 44.0 | 3.65e-01 | 71.7% | 64.3% |
| 2cq0A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 40.0 | 4.55e-01 | 75.9% | 90.3% |
| 3to8A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 42.0 | 4.80e-01 | 76.6% | 98.1% |
| 2jgbA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.60 | 42.0 | 3.97e-01 | 71.7% | 89.6% |
| 1gh8A00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.59 | 36.0 | 4.38e-01 | 73.8% | 96.6% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 37.0 | 4.44e-01 | 75.2% | 96.7% |
| 2mzqA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 37.0 | 4.27e-01 | 71.7% | 89.1% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 32.0 | 4.10e-01 | 73.1% | 92.7% |
| 1wvqA00 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.57 | 41.0 | 3.98e-01 | 73.8% | 69.9% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.57 | 40.0 | 3.67e-01 | 71.0% | 70.8% |
| 1yg9A01 | 2.60.40.1960 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 26.0 | 3.62e-01 | 70.3% | 86.5% |
| 1qd1A01 | 3.30.990.10 | Alpha Beta › 2-Layer Sandwich › Formiminotransferase-cyclodeaminase; Chain B, domain 1 › Formiminotransferase, N-terminal subdomain | 0.55 | 40.0 | 3.71e-01 | 75.2% | 99.4% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.54 | 47.0 | 4.40e-01 | 93.8% | 85.8% |
| 5d79A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.52 | 38.0 | 3.54e-01 | 76.6% | 69.0% |
| 4pvkA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.52 | 37.0 | 3.45e-01 | 71.7% | 70.1% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 38.0 | 3.36e-01 | 76.6% | 90.0% |
| 1ao0A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 37.0 | 2.97e-01 | 75.2% | 53.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5112 | 304.55.1.10 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD | 0.96 | 87.0 | 8.97e-01 | 97.9% | 97.8% |
| 2791434 | 304.55.1.10 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD | 0.95 | 91.0 | 8.93e-01 | 97.9% | 93.4% |
| 2796430 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.79 | 55.0 | 6.44e-01 | 76.6% | 100.0% |
| 4927807 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.73 | 41.0 | 5.21e-01 | 75.2% | 94.1% |
| 5050897 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.73 | 42.0 | 5.34e-01 | 75.9% | 97.6% |
| 5043269 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.72 | 42.0 | 5.26e-01 | 75.9% | 96.5% |
| 4944621 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.72 | 44.0 | 4.72e-01 | 71.7% | 70.4% |
| 4943756 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.72 | 43.0 | 4.73e-01 | 71.0% | 72.5% |
| 4944755 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.71 | 42.0 | 5.15e-01 | 75.9% | 92.2% |
| 4951741 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.71 | 42.0 | 5.18e-01 | 75.2% | 93.3% |
| 2714493 | 304.55.1.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 | 0.70 | 54.0 | 5.99e-01 | 79.3% | 100.0% |
| 4399086 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.69 | 39.0 | 4.83e-01 | 73.8% | 91.8% |
| 4540169 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.69 | 41.0 | 5.17e-01 | 73.8% | 100.0% |
| 3588197 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.69 | 41.0 | 5.18e-01 | 71.0% | 100.0% |
| 5046762 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.69 | 43.0 | 5.24e-01 | 77.2% | 100.0% |
| 5000078 | 304.59.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 | 0.68 | 41.0 | 4.98e-01 | 77.2% | 91.6% |
| 4946289 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.68 | 41.0 | 5.01e-01 | 76.6% | 95.6% |
| 3978701 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.67 | 41.0 | 4.93e-01 | 74.5% | 95.6% |
| 4643972 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.67 | 41.0 | 4.91e-01 | 75.9% | 93.5% |
| 1491756 | 304.55.1.9 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 | 0.67 | 50.0 | 4.16e-01 | 77.2% | 93.1% |
| 4990691 | 304.59.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 | 0.67 | 41.0 | 5.01e-01 | 75.9% | 97.8% |
| 4984065 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.66 | 40.0 | 4.57e-01 | 74.5% | 80.0% |
| 4946216 | 304.4.1.83 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HTH_24 | 0.65 | 44.0 | 4.70e-01 | 71.7% | 78.4% |
| 4090693 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.65 | 42.0 | 4.64e-01 | 71.0% | 81.7% |
| 5047334 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 39.0 | 4.69e-01 | 74.5% | 91.6% |
| 3250992 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.62 | 39.0 | 4.45e-01 | 84.8% | 85.7% |
| 302769 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.62 | 40.0 | 4.84e-01 | 77.2% | 100.0% |
| 3182321 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.60 | 35.0 | 4.11e-01 | 77.9% | 82.0% |
| 3997321 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 41.0 | 4.36e-01 | 99.3% | 83.1% |
| 2605091 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.57 | 42.0 | 3.43e-01 | 76.6% | 78.4% |
| 3216877 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.57 | 31.0 | 3.92e-01 | 83.4% | 88.2% |
| 3619322 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.56 | 31.0 | 3.76e-01 | 83.4% | 83.0% |
| 5049083 | 304.37.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 | 0.54 | 43.0 | 3.65e-01 | 84.1% | 91.0% |
| 4017351 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.52 | 43.0 | 3.49e-01 | 89.7% | 53.4% |
| 3421867 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.52 | 42.0 | 3.46e-01 | 86.2% | 88.8% |
| 4323062 | 2003.1.2.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 | 0.50 | 44.0 | 3.37e-01 | 98.6% | 89.5% |
| 3339092 | 304.9.1.83 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, RBM39linker | 0.50 | 40.0 | 3.37e-01 | 83.4% | 64.3% |
D2
high
residues 342-407
Domain cluster:
rep: putative_E1_protein__YP_009021236__Canis_familiaris_papillomavirus_13__1226723__D314-376
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00519.24 best | PPV_E1_C | 90.9 | 1.10e-25 | 95.5% | 21.4% |
D3
high
residues 448-612
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00519.24 best | PPV_E1_C | 258.8 | 8.40e-77 | 100.0% | 56.4% |
| PF01057.24 | Parvo_NS1 | 40.7 | 2.00e-10 | 98.2% | 39.9% |
| PF19263.6 | DUF5906 | 35.5 | 2.00e-08 | 63.0% | 89.4% |