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E1
Euk-VirCanis_familiaris_papillomavirus_8
E1__YP_004857844__Canis_familiaris_papillomavirus_8__1081055
Identity
- Accession:
- YP_004857844 ↗
- Protein ID:
- E1
- Kingdom:
- euk
Quality
75.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Chipapillomavirus›
Canis_familiaris_papillomavirus_8
TaxID: 1081055
Cluster
View cluster (151 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 450-568
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00519.24 best | PPV_E1_C | 203.9 | 4.40e-60 | 100.0% | 40.1% |
| PF01057.24 | Parvo_NS1 | 23.9 | 2.70e-05 | 87.4% | 34.7% |
| PF19263.6 | DUF5906 | 34.1 | 5.20e-08 | 86.6% | 93.8% |
D2
medium
residues 194-320
Domain cluster:
rep: E1__YP_004306475__Camelus_dromedarius_papillomavirus_2__996651__D192-336
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20450.5 best | PPV_E1_DBD | 152.7 | 1.10e-44 | 100.0% | 89.3% |
D3
medium
residues 333-395
Domain cluster:
rep: putative_E1_protein__YP_009021236__Canis_familiaris_papillomavirus_13__1226723__D314-376
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00519.24 best | PPV_E1_C | 96.3 | 2.60e-27 | 100.0% | 21.4% |
D4
medium
residues 398-449
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00519.24 best | PPV_E1_C | 63.2 | 3.10e-17 | 100.0% | 18.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tueD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.99 | 95.0 | 6.04e-01 | 100.0% | 25.7% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.56 | 37.0 | 3.12e-01 | 80.8% | 40.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 9753 | 2004.1.1.48 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPV_E1_C | 0.99 | 94.0 | 6.02e-01 | 100.0% | 25.9% |
| 4016103 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 40.0 | 4.13e-01 | 75.0% | 68.0% |
| 3947986 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.52 | 38.0 | 3.67e-01 | 92.3% | 66.7% |
| 3702895 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.51 | 37.0 | 3.64e-01 | 98.1% | 72.7% |