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E1

Euk-Vir

Trichechus_manatus_latirostris_papillomavirus_4

E1__YP_009177727__Trichechus_manatus_latirostris_papillomavirus_4__2848317

Identity

Accession:
YP_009177727 ↗
Protein ID:
E1
Kingdom:
euk

Quality

76.5 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Rhopapillomavirus› Trichechus_manatus_latirostris_papillomavirus_4

TaxID: 2848317

Cluster

View cluster (151 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 182-322
PDB
Domain cluster: rep: E1__YP_004306475__Camelus_dromedarius_papillomavirus_2__996651__D192-336
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20450.5 best PPV_E1_DBD 165.5 1.20e-48 97.9% 97.9%
D2 high residues 333-395
PDB
Domain cluster: rep: putative_E1_protein__YP_009021236__Canis_familiaris_papillomavirus_13__1226723__D314-376
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00519.24 best PPV_E1_C 93.1 2.40e-26 100.0% 21.8%
D3 medium residues 410-463_537-571
PDB
Domain cluster: rep: E1__YP_717903__Canis_familiaris_papillomavirus_3__360397__D413-471_566-595
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 22.1 9.70e-05 62.9% 17.0%
PF00519.24 PPV_E1_C 77.5 1.40e-21 61.8% 18.3%
PF00519.24 PPV_E1_C 31.6 1.40e-07 41.6% 12.5%
D4 medium residues 464-536_572-599
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00519.24 best PPV_E1_C 123.8 1.10e-35 74.3% 25.3%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.91 86.0 6.60e-01 99.0% 66.8%
3bxoA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 38.0 3.17e-01 72.3% 74.6%
2vk1A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.53 47.0 3.88e-01 99.0% 95.2%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 3.01e-01 72.3% 83.2%
2pgnA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.52 47.0 3.83e-01 100.0% 93.6%
1l6wA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 40.0 3.13e-01 84.2% 86.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2810781 8001.1.1.1 ↗ alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C 0.91 87.0 6.49e-01 100.0% 61.1%
9753 2004.1.1.48 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPV_E1_C 0.89 85.0 6.50e-01 99.0% 65.2%
2704206 2004.1.1.57 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.71 63.0 4.58e-01 98.0% 48.6%
4542391 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 43.0 3.26e-01 72.3% 29.6%
3784945 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.53 45.0 3.36e-01 94.1% 97.7%
5040208 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 36.0 3.34e-01 71.3% 80.0%
4947648 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 36.0 2.98e-01 72.3% 76.8%
5015360 2002.1.1.11 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PK 0.50 41.0 3.17e-01 91.1% 66.3%