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E1
Euk-VirGammapapillomavirus_sp.
E1__YP_009551932__Gammapapillomavirus_sp.__2049444
Identity
- Accession:
- YP_009551932 ↗
- Protein ID:
- E1
- Kingdom:
- euk
Quality
75.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Gammapapillomavirus_sp.
TaxID: 2049444
Cluster
View cluster (151 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 166-275
Domain cluster:
rep: E1__YP_004306475__Camelus_dromedarius_papillomavirus_2__996651__D192-336
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20450.5 best | PPV_E1_DBD | 126.0 | 1.80e-36 | 95.5% | 77.9% |
D2
high
residues 409-579
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00519.24 best | PPV_E1_C | 261.8 | 9.80e-78 | 100.0% | 58.8% |
| PF01057.24 | Parvo_NS1 | 23.0 | 4.90e-05 | 94.7% | 36.9% |
D3
medium
residues 312-408
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00519.24 best | PPV_E1_C | 143.9 | 8.20e-42 | 100.0% | 33.2% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 1.00 | 68.0 | 7.96e-01 | 70.1% | 93.2% |
| 1svmA01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.92 | 63.0 | 6.53e-01 | 70.1% | 100.0% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 32.0 | 3.68e-01 | 75.3% | 60.0% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 37.0 | 3.22e-01 | 72.2% | 38.9% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 4.40e-01 | 84.5% | 80.6% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 33.0 | 3.39e-01 | 70.1% | 53.2% |
| 7lb8B02 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.58 | 42.0 | 2.94e-01 | 76.3% | 80.3% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 33.0 | 3.82e-01 | 71.1% | 78.1% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 38.0 | 3.16e-01 | 72.2% | 65.7% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 38.0 | 3.50e-01 | 73.2% | 85.9% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 37.0 | 3.25e-01 | 72.2% | 78.5% |
| 2qkoA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 43.0 | 3.63e-01 | 91.8% | 89.1% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.53 | 36.0 | 3.38e-01 | 70.1% | 76.6% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 37.0 | 3.11e-01 | 72.2% | 74.1% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 36.0 | 3.67e-01 | 74.2% | 80.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4882224 | 8001.1.1.2 ↗ | alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › Polyoma_lg_T_C | 0.90 | 67.0 | 6.75e-01 | 76.3% | 100.0% |
| 143220 | 603.1.1.8 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Spectrin_2 | 0.64 | 36.0 | 3.95e-01 | 74.2% | 67.5% |
| 3580795 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.64 | 34.0 | 2.87e-01 | 74.2% | 31.2% |
| 3962847 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 36.0 | 3.73e-01 | 80.4% | 61.1% |
| 4003656 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.58 | 46.0 | 3.71e-01 | 84.5% | 60.0% |
| 4888301 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.53 | 35.0 | 3.56e-01 | 78.4% | 66.3% |
| 3928247 | 604.1.1.106 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TPR_SYVN1_N | 0.53 | 41.0 | 3.02e-01 | 83.5% | 68.1% |
| 3725031 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 41.0 | 3.44e-01 | 80.4% | 68.1% |
| 3591988 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 44.0 | 3.06e-01 | 92.8% | 82.7% |
| 3845925 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 38.0 | 3.51e-01 | 77.3% | 94.4% |
| 4605065 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.52 | 36.0 | 2.73e-01 | 72.2% | 82.6% |
| 3781298 | 5069.1.3.90 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › TMEM33_Pom33 | 0.51 | 41.0 | 3.11e-01 | 86.6% | 80.9% |
| 3192627 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.51 | 40.0 | 3.24e-01 | 85.6% | 73.3% |
| 4954644 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.51 | 35.0 | 3.26e-01 | 71.1% | 70.8% |
| 3884438 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.50 | 36.0 | 3.93e-01 | 74.2% | 93.8% |