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E1

Euk-Vir

Trichechus_manatus_latirostris_papillomavirus_1

E1__YP_164623__Trichechus_manatus_latirostris_papillomavirus_1__2908011

Identity

Accession:: YP_164623 ↗
Protein ID:: E1
Kingdom:: euk

Quality

74.7 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Rhopapillomavirus› Trichechus_manatus_latirostris_papillomavirus_1

TaxID: 2908011

Cluster

View cluster (151 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 167-290

PDB

Domain cluster: rep: E1__YP_004306475__Camelus_dromedarius_papillomavirus_2__996651__D192-336

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20450.5 best	PPV_E1_DBD	154.6	2.80e-45	95.2%	83.6%

D2 high residues 433-580

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00519.24 best	PPV_E1_C	254.1	2.10e-75	100.0%	51.2%
PF01057.24	Parvo_NS1	31.8	1.10e-07	85.8%	37.3%
PF19263.6	DUF5906	29.4	1.60e-06	69.6%	88.5%

D3 medium residues 291-384

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00519.24 best	PPV_E1_C	99.3	3.20e-28	73.4%	23.5%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gxaE01	1.10.10.510	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain	0.97	73.0	8.38e-01	85.1%	100.0%
1svmA01	1.10.10.510	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain	0.91	65.0	6.66e-01	73.4%	100.0%
1bgfA00	1.10.532.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain	0.64	44.0	4.02e-01	70.2%	79.0%
2vkjA00	1.20.58.2030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	44.0	4.24e-01	91.5%	62.3%
3ousA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	35.0	3.74e-01	75.5%	74.4%
2qkoA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	37.0	3.06e-01	71.3%	42.5%
8ctsB01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	37.0	3.84e-01	78.7%	78.2%
4rngC00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.52	37.0	3.95e-01	73.4%	94.0%
1lk3A00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.52	35.0	3.16e-01	70.2%	82.4%
3pe0A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	36.0	3.57e-01	73.4%	96.0%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.50	36.0	3.52e-01	73.4%	89.2%
4hwhE00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.50	36.0	3.70e-01	73.4%	95.5%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2486293	8001.1.1.1 ↗	alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C	0.99	68.0	7.94e-01	70.2%	93.0%
4882224	8001.1.1.2 ↗	alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › Polyoma_lg_T_C	0.89	63.0	6.31e-01	73.4%	93.8%
3661215	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.59	36.0	2.89e-01	77.7%	30.3%
3280033	191.1.1.17 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13	0.57	39.0	3.55e-01	70.2%	69.6%
3397519	109.4.1.386 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rapsyn_N	0.55	47.0	3.10e-01	96.8%	81.7%
4259729	3755.3.1.295 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1	0.52	37.0	3.38e-01	75.5%	100.0%
3780517	109.3.1.162 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5	0.51	46.0	3.15e-01	100.0%	87.0%
3845925	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	37.0	3.39e-01	75.5%	85.6%
3800823	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	36.0	3.51e-01	74.5%	84.8%