E1_protein

Euk-Vir

Giraffa_camelopardalis_papillomavirus_1

E1_protein__YP_009508736__Giraffa_camelopardalis_papillomavirus_1__1922325

Identity

76.2 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Deltapapillomavirus› Giraffa_camelopardalis_papillomavirus_1

TaxID: 1922325

View cluster (151 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 160-211_223-244

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20450.5 best	PPV_E1_DBD	45.4	1.50e-11	89.2%	32.1%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1f08B00	3.40.1310.10	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.99	95.0	7.23e-01	98.6%	57.9%
3gnlA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.60	45.0	3.65e-01	86.5%	94.5%
2bg9A01	2.70.170.10	Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain	0.55	38.0	2.78e-01	73.0%	51.9%
2kx2A00	3.30.780.30	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 ›	0.53	39.0	3.69e-01	98.6%	62.5%
2pgxA02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	42.0	3.30e-01	97.3%	96.3%
5axgA03	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.51	41.0	3.56e-01	93.2%	88.9%
2ktyA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.50	42.0	3.58e-01	98.6%	89.6%
5mmiU01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.50	42.0	4.13e-01	98.6%	86.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2791434	304.55.1.10 ↗	a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD	0.94	87.0	6.62e-01	97.3%	54.6%
5031980	4081.1.1.0 ↗	beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related	0.51	42.0	3.20e-01	93.2%	87.0%
3488171	273.1.1.1 ↗	a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP	0.51	39.0	3.10e-01	83.8%	60.6%

D2 medium residues 312-376

PDB

Domain cluster: rep: putative_E1_protein__YP_009021236__Canis_familiaris_papillomavirus_13__1226723__D314-376

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00519.24 best	PPV_E1_C	92.7	3.40e-26	100.0%	21.8%

D3 medium residues 377-424_563-580

PDB

Domain cluster: rep: E1__YP_004169265__Human_papillomavirus_type_128__931209__D372-424_556-584

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00519.24 best	PPV_E1_C	45.3	9.40e-12	77.3%	16.3%

D4 medium residues 425-562

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00519.24 best	PPV_E1_C	225.1	1.50e-66	100.0%	47.4%
PF01057.24	Parvo_NS1	46.4	3.60e-12	96.4%	39.5%
PF19263.6	DUF5906	31.1	4.60e-07	73.2%	89.4%