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E1_protein

Euk-Vir

Pudu_puda_papillomavirus_1

E1_protein__YP_009508744__Pudu_puda_papillomavirus_1__1747360

Identity

Accession:
YP_009508744 ↗
Protein ID:
E1_protein
Kingdom:
euk

Quality

79.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 161-303
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20450.5 best PPV_E1_DBD 183.4 3.50e-54 94.4% 96.4%
D2 high residues 309-379
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00519.24 best PPV_E1_C 100.0 1.90e-28 95.8% 23.2%
D3 high residues 388-586
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00519.24 best PPV_E1_C 336.0 2.50e-100 100.0% 68.9%
PF01057.24 Parvo_NS1 45.5 7.00e-12 74.9% 48.3%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.96 92.0 9.18e-01 98.0% 96.5%
1svmA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.84 61.0 6.98e-01 73.9% 100.0%
1u0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.79 72.0 7.16e-01 97.5% 92.7%
3vkgA05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 52.0 5.90e-01 73.9% 100.0%
3m6aA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 52.0 5.89e-01 76.4% 98.7%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 54.0 5.53e-01 78.4% 96.8%
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 52.0 5.23e-01 78.9% 100.0%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 62.0 5.17e-01 99.5% 89.2%
3d8bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 51.0 5.02e-01 77.4% 77.8%
1jqlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 44.0 5.12e-01 72.4% 97.9%
5fhgA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 46.0 4.70e-01 75.9% 91.2%
3u7eB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 44.0 4.57e-01 76.9% 90.2%
1dekA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 35.0 4.43e-01 78.4% 99.2%
7z67A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 4.23e-01 80.9% 91.7%
4jgiB02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.55 35.0 4.24e-01 98.0% 99.2%
3g68A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 39.0 4.45e-01 91.0% 100.0%
3c3mA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 33.0 3.93e-01 85.4% 95.1%
2b4aA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 32.0 3.99e-01 99.5% 100.0%
4ldaB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 34.0 4.04e-01 99.0% 98.4%
3a8tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 4.18e-01 77.9% 99.4%
2zayA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 33.0 3.99e-01 98.5% 100.0%
3lufB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 33.0 3.91e-01 98.0% 96.0%
7w0bA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 3.97e-01 78.4% 81.0%
1knqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 4.18e-01 77.9% 98.8%
1qf9A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 3.99e-01 78.9% 98.5%
5t3yA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 32.0 3.89e-01 99.0% 99.2%
1zakA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 3.92e-01 82.4% 99.5%
4lpsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 3.81e-01 78.9% 90.2%
2bwjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 3.94e-01 78.4% 97.4%
3hl0A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 3.96e-01 74.4% 89.9%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 36.0 3.47e-01 71.9% 91.6%
3qtgA03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.51 28.0 3.54e-01 82.4% 91.3%
3rhfD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.93e-01 94.0% 94.6%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 3.74e-01 79.4% 100.0%
2rhmC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 3.97e-01 79.4% 98.9%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2810781 8001.1.1.1 alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C 0.96 93.0 8.95e-01 100.0% 89.6%
9753 2004.1.1.48 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPV_E1_C 0.96 90.0 9.04e-01 98.0% 95.0%
3479645 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 59.0 6.21e-01 73.4% 96.1%
5011495 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 66.0 6.59e-01 83.9% 84.0%
3253892 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.80 72.0 7.30e-01 93.5% 98.5%
5035042 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.80 74.0 6.59e-01 98.5% 90.5%
5029777 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.80 74.0 6.79e-01 98.5% 90.6%
4959586 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.80 74.0 6.51e-01 98.0% 78.5%
5081314 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 74.0 6.71e-01 98.5% 88.5%
2704206 2004.1.1.57 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.79 74.0 6.49e-01 97.5% 90.2%
3954608 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.79 73.0 6.61e-01 98.0% 88.8%
3945876 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.78 73.0 6.55e-01 98.5% 88.7%
5022020 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.78 73.0 6.54e-01 98.5% 90.9%
4931926 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 71.0 6.05e-01 99.0% 85.1%
4926850 2004.1.1.22 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.75 55.0 6.21e-01 83.4% 96.8%
5056933 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.74 50.0 5.96e-01 80.4% 100.0%
3981677 2004.1.1.22 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.73 57.0 5.28e-01 80.4% 75.5%
4998586 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 58.0 5.73e-01 89.4% 78.1%
None 0.73 55.0 5.25e-01 76.9% 99.6%
3925708 2004.1.1.183 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_9 0.72 50.0 5.87e-01 77.4% 100.0%
4542391 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 54.0 4.94e-01 76.4% 65.6%
None 0.72 53.0 5.76e-01 76.4% 93.5%
None 0.72 53.0 5.70e-01 75.4% 92.4%
None 0.71 53.0 5.68e-01 75.4% 92.4%
3256248 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.71 49.0 5.85e-01 70.9% 100.0%
None 0.71 53.0 5.92e-01 76.9% 98.1%
3390911 138.1.1.13 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › AAA 0.71 53.0 4.42e-01 76.9% 55.8%
4351475 2004.1.1.624 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_5 0.71 63.0 5.66e-01 93.5% 93.6%
4974760 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 56.0 5.69e-01 81.4% 99.0%
4955069 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 55.0 6.09e-01 82.4% 100.0%
None 0.71 52.0 5.78e-01 75.9% 98.1%
None 0.71 54.0 5.64e-01 77.9% 89.4%
None 0.70 53.0 5.43e-01 76.9% 82.6%
4033843 2004.1.1.313 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom 0.70 64.0 6.45e-01 97.0% 98.5%
4069782 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 56.0 5.06e-01 83.4% 73.6%
4944898 2004.1.1.1210 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_lid_2 0.70 62.0 5.67e-01 94.0% 97.3%
None 0.70 53.0 5.68e-01 78.9% 92.0%
4224436 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 52.0 4.73e-01 76.9% 99.6%
4994590 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 62.0 6.12e-01 94.5% 99.0%
5048100 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.69 62.0 5.65e-01 94.0% 97.6%
3968271 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.69 62.0 6.07e-01 94.0% 99.0%
4997974 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.69 55.0 5.40e-01 81.4% 100.0%
3712546 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.69 51.0 5.38e-01 75.4% 100.0%
5023501 2004.1.1.58 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.69 55.0 5.00e-01 82.4% 100.0%
3703312 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 64.0 5.04e-01 99.0% 82.8%
3411152 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.69 58.0 5.47e-01 89.4% 94.6%
3975473 2004.1.1.136 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF927 0.68 62.0 5.47e-01 98.5% 91.4%
3387909 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.68 63.0 5.75e-01 99.0% 84.3%
3700532 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 51.0 5.67e-01 77.4% 100.0%
3998381 2004.1.1.432 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.68 54.0 5.02e-01 82.9% 78.0%
3505081 2004.1.1.98 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 0.67 50.0 5.11e-01 77.4% 95.9%
3166204 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.67 61.0 5.75e-01 97.5% 92.3%
3839744 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 61.0 5.51e-01 98.5% 89.8%
3263243 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.66 52.0 5.26e-01 81.9% 95.0%
4944736 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 51.0 4.86e-01 81.4% 87.0%
3605947 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 46.0 5.21e-01 74.9% 96.0%
4998715 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 48.0 5.43e-01 79.9% 100.0%
3396047 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.63 47.0 4.49e-01 75.9% 77.8%
3700966 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.63 50.0 3.97e-01 81.4% 45.6%
3670838 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.62 50.0 4.37e-01 84.4% 85.0%
3441401 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.59 47.0 4.08e-01 82.9% 70.5%
3577613 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.58 44.0 4.41e-01 78.4% 92.1%
3798371 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 44.0 4.55e-01 78.4% 92.4%
3704329 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 44.0 4.40e-01 79.4% 92.3%
3377641 2004.1.1.44 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PRK 0.58 44.0 4.28e-01 78.9% 88.2%
5022725 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 53.0 4.69e-01 100.0% 98.9%
3773669 2004.1.1.191 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.51 39.0 3.77e-01 79.9% 100.0%
3883210 2004.1.1.191 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.51 39.0 3.87e-01 79.4% 98.6%
3719563 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 3.69e-01 78.9% 99.6%