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E1b_55K
Euk-VirEquine_adenovirus_2
E1b_55K__YP_009162342__Equine_adenovirus_2__67603
Identity
- Accession:
- YP_009162342 ↗
- Protein ID:
- E1b_55K
- Kingdom:
- euk
Quality
86.3
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Equine_adenovirus_2
TaxID: 67603
Cluster
View cluster (36 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 25-241
Domain cluster:
rep: E1B_55_kDa_protein__YP_009389487__red_squirrel_adenovirus_1__2773314__D27-230
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01696.24 best | Adeno_E1B_55K | 169.9 | 1.00e-49 | 99.5% | 55.0% |
| PF13229.13 | Beta_helix | 26.2 | 7.40e-06 | 54.4% | 63.3% |
D2
medium
residues 242-371
Domain cluster:
rep: E1B_55K__YP_009174142__Simian_adenovirus_16__1715778__D309-480
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01696.24 best | Adeno_E1B_55K | 113.5 | 1.30e-32 | 100.0% | 32.8% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k8fA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.59 | 49.0 | 4.62e-01 | 100.0% | 73.9% |
| 5jnmA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 50.0 | 4.30e-01 | 94.6% | 91.1% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.56 | 46.0 | 4.32e-01 | 100.0% | 71.5% |
| 2nw0A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 46.0 | 4.07e-01 | 88.5% | 92.6% |
| 1vblA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.54 | 49.0 | 3.42e-01 | 100.0% | 63.2% |
| 2ew2B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 4.10e-01 | 93.8% | 87.2% |
| 3gt0A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 44.0 | 4.14e-01 | 93.1% | 85.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2082632 | 207.2.1.5 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Adeno_E1B_55K | 0.71 | 58.0 | 4.18e-01 | 100.0% | 32.6% |
| 3708794 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.53 | 47.0 | 4.33e-01 | 100.0% | 74.0% |
| 4471739 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.52 | 48.0 | 3.81e-01 | 100.0% | 91.5% |
| 4667612 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.52 | 47.0 | 3.72e-01 | 100.0% | 81.5% |
| 4031089 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.51 | 47.0 | 3.71e-01 | 100.0% | 90.6% |
| 4144650 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.51 | 47.0 | 3.71e-01 | 100.0% | 71.5% |
| 3599238 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.51 | 47.0 | 4.28e-01 | 100.0% | 91.2% |
| 4394964 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.51 | 46.0 | 3.72e-01 | 100.0% | 91.4% |
| 3273380 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 46.0 | 3.01e-01 | 99.2% | 24.7% |
| 4984746 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.50 | 42.0 | 3.58e-01 | 91.5% | 74.8% |
| 4386723 | 207.2.1.35 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DUF4097 | 0.50 | 46.0 | 3.72e-01 | 100.0% | 73.5% |