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E2

Euk-Vir

Psittacus_erithacus_papillomavirus_1

E2__NP_647588__Psittacus_erithacus_papillomavirus_1__2773288

Identity

Accession:
NP_647588 ↗
Protein ID:
E2
Kingdom:
euk

Quality

77.0 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Thetapapillomavirus› Psittacus_erithacus_papillomavirus_1

TaxID: 2773288

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-95
PDB
Domain cluster: rep: E2_regulatory_protein__YP_002308360__Caretta_caretta_papillomavirus_1__485241__D3-95
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00508.23 best PPV_E2_N 79.2 3.80e-22 100.0% 47.0%
D2 high residues 99-190
PDB
Domain cluster: rep: E2__YP_009252394__Cervus_papillomavirus_2__1434070__D104-195
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00508.23 best PPV_E2_N 33.7 3.30e-08 98.9% 40.5%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qqhA00 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.89 82.0 6.91e-01 100.0% 62.5%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.89 83.0 8.05e-01 100.0% 90.1%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 35.0 3.40e-01 87.0% 43.1%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 33.0 3.39e-01 87.0% 46.6%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 36.0 3.82e-01 77.2% 75.9%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 38.0 3.77e-01 78.3% 68.4%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.40e-01 78.3% 49.0%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 38.0 3.05e-01 77.2% 69.9%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 3.15e-01 100.0% 45.0%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 38.0 2.86e-01 76.1% 52.7%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.12e-01 100.0% 43.6%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.00e-01 87.0% 50.5%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.48e-01 84.8% 69.2%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 40.0 3.16e-01 87.0% 44.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
262552 52.1.1.1 ↗ beta sandwiches › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › PPV_E2_N 0.90 83.0 8.05e-01 100.0% 89.9%
2083 52.1.1.1 ↗ beta sandwiches › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › PPV_E2_N 0.89 82.0 6.91e-01 100.0% 62.5%
2084 52.1.1.1 ↗ beta sandwiches › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › PPV_E2_N 0.89 82.0 6.22e-01 100.0% 46.4%
1581082 52.1.1.1 ↗ beta sandwiches › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › PPV_E2_N 0.88 82.0 7.91e-01 100.0% 89.2%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.61 32.0 3.42e-01 77.2% 56.2%
4940079 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 33.0 3.68e-01 87.0% 65.3%
4965206 4221.1.1.3 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008 0.60 37.0 4.15e-01 83.7% 80.0%
3686917 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.57 39.0 3.31e-01 70.7% 49.4%
3614740 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.54 41.0 3.72e-01 93.5% 57.7%
3217506 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.54 41.0 3.72e-01 79.3% 100.0%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 34.0 3.20e-01 77.2% 51.3%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 31.0 3.41e-01 77.2% 71.4%
3405656 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 38.0 3.12e-01 75.0% 62.4%
3743128 4135.1.1.0 ↗ beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.52 36.0 3.26e-01 72.8% 85.2%
3548274 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 37.0 3.46e-01 77.2% 88.3%
3708379 5.1.5.208 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.51 45.0 2.69e-01 100.0% 26.6%
1401858 71.1.1.6 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.51 40.0 3.16e-01 87.0% 44.3%
3961274 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.50 35.0 3.15e-01 92.4% 51.5%
D3 high residues 268-368
PDB
Domain cluster: rep: E2__YP_009272701__Sparus_aurata_papillomavirus_1__1885928__D227-298
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00511.23 best PPV_E2_C 83.2 1.70e-23 73.3% 98.8%