←Back to structures
E56
Euk-VirMurid_betaherpesvirus_8
E56__YP_007016463__Murid_betaherpesvirus_8__1261657
Identity
- Accession:
- YP_007016463 ↗
- Protein ID:
- E56
- Kingdom:
- euk
Quality
77.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Muromegalovirus›
Murid_betaherpesvirus_8
TaxID: 1261657
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 539-717
Domain cluster:
rep: DNA_packaging_terminase_subunit_2__YP_081515__Human_betaherpesvirus_5__10359__D575-765
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 155.8 | 1.90e-45 | 59.2% | 16.0% |
D2
medium
residues 3-223
Domain cluster:
rep: HSV_ICP18.5_homolog__YP_214068__Murid_betaherpesvirus_1__10366__D5-201
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 288.0 | 1.70e-85 | 99.1% | 33.2% |
D3
medium
residues 224-267_311-373
Domain cluster:
rep: DNA_packaging_terminase_subunit_2__NP_612700__Panine_betaherpesvirus_2__188763__D230-266_319-361
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 50.2 | 1.70e-13 | 67.3% | 10.1% |
D4
medium
residues 268-310_374-406_480-526
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 48.0 | 7.90e-13 | 39.0% | 6.7% |
| PF01366.24 | PRTP | 38.5 | 5.70e-10 | 35.8% | 5.6% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.55 | 30.0 | 3.39e-01 | 80.5% | 68.9% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.52 | 27.0 | 3.10e-01 | 76.4% | 67.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269731 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 32.0 | 3.35e-01 | 79.7% | 51.3% |
| 3963181 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.55 | 38.0 | 2.96e-01 | 70.7% | 52.7% |