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E6
Euk-VirMorelia_spilota_papillomavirus_1
E6__YP_004857835__Morelia_spilota_papillomavirus_1__1081054
Identity
- Accession:
- YP_004857835 ↗
- Protein ID:
- E6
- Kingdom:
- euk
Quality
85.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyomupapillomavirus›
Morelia_spilota_papillomavirus_1
TaxID: 1081054
Cluster
View cluster (138 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-80
Domain cluster:
rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59
D2
high
residues 86-166
Domain cluster:
rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00518.23 best | E6 | 57.0 | 3.30e-15 | 85.2% | 60.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m3lA00 | 3.30.240.40 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein | 0.91 | 71.0 | 7.35e-01 | 81.5% | 88.2% |
| 2ljxA00 | 3.30.240.40 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein | 0.76 | 62.0 | 6.23e-01 | 87.7% | 89.0% |
| 1r79A01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 36.0 | 4.14e-01 | 82.7% | 89.1% |
| 4b6dB00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 35.0 | 4.00e-01 | 82.7% | 84.2% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 32.0 | 3.87e-01 | 81.5% | 88.2% |
| 2rowA01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.54 | 35.0 | 3.65e-01 | 90.1% | 73.2% |
| 2juoA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 38.0 | 3.75e-01 | 79.0% | 100.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4802727 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.97 | 80.0 | 8.69e-01 | 85.2% | 98.6% |
| 1734555 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.94 | 88.0 | 8.85e-01 | 100.0% | 97.5% |
| 185478 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.89 | 69.0 | 7.63e-01 | 81.5% | 100.0% |
| 4802726 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.83 | 61.0 | 6.79e-01 | 76.5% | 96.9% |
| 3036062 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.79 | 65.0 | 6.72e-01 | 86.4% | 93.4% |
| 185477 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.69 | 51.0 | 5.57e-01 | 92.6% | 94.0% |
| 5041846 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 29.0 | 3.56e-01 | 97.5% | 97.4% |
| 3509728 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 34.0 | 3.93e-01 | 81.5% | 98.2% |
| 3763621 | 221.1.1.42 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › GABP-alpha | 0.51 | 37.0 | 3.63e-01 | 77.8% | 90.0% |