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E6

Euk-Vir

Canis_familiaris_papillomavirus_8

E6__YP_004857842__Canis_familiaris_papillomavirus_8__1081055

Identity

Accession:
YP_004857842 ↗
Protein ID:
E6
Kingdom:
euk

Quality

91.8 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Chipapillomavirus› Canis_familiaris_papillomavirus_8

TaxID: 1081055

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-66
PDB
Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 31.0 4.20e-07 58.6% 30.9%
D2 high residues 72-136
PDB
Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 38.3 2.20e-09 100.0% 57.3%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.78 62.0 5.91e-01 86.2% 75.0%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.70 54.0 5.01e-01 83.1% 67.1%
1kgqA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.60 43.0 3.20e-01 76.9% 41.8%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.48e-01 83.1% 78.9%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.45e-01 83.1% 84.8%
2napA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.55 43.0 3.04e-01 89.2% 98.7%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.54e-01 83.1% 87.5%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.40e-01 81.5% 85.8%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.41e-01 83.1% 91.8%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.39e-01 83.1% 85.6%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.39e-01 83.1% 89.0%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.19e-01 83.1% 81.5%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.08e-01 81.5% 81.9%
1r89A01 1.10.1410.30 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › CCA tRNA nucleotidyltransferase, domain 2 0.51 38.0 3.11e-01 81.5% 55.7%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.02e-01 81.5% 82.7%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 3.03e-01 80.0% 86.8%
3nybA01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.50 37.0 2.69e-01 81.5% 84.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4802727 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.91 84.0 8.16e-01 98.5% 92.9%
1734555 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.86 77.0 7.12e-01 98.5% 79.0%
4802726 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.75 58.0 5.85e-01 81.5% 85.9%
185478 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.75 60.0 6.07e-01 89.2% 87.7%
3036062 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.66 54.0 5.14e-01 89.2% 77.6%
4238159 208.1.1.4 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.62 44.0 3.17e-01 76.9% 39.0%
3219337 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 46.0 4.04e-01 86.2% 79.0%
4050622 208.1.1.6 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_2 0.59 42.0 3.06e-01 75.4% 36.8%
2886759 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.59 44.0 3.53e-01 83.1% 76.3%
3960172 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 42.0 3.55e-01 78.5% 89.8%
3679413 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 43.0 3.23e-01 83.1% 61.7%
3213524 243.1.1.82 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 0.58 42.0 3.33e-01 81.5% 77.4%
3957839 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 41.0 3.44e-01 83.1% 80.8%
6395 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 41.0 3.42e-01 83.1% 77.2%
5072383 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.55 41.0 3.26e-01 83.1% 78.6%
1146735 243.1.1.29 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4783 0.53 39.0 3.41e-01 83.1% 91.8%
3536326 1073.1.1.0 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) 0.53 38.0 3.53e-01 78.5% 94.4%
3970325 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.53 39.0 3.17e-01 83.1% 81.4%
2605238 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 37.0 3.33e-01 83.1% 95.3%
3234788 243.9.1.2 ↗ a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › Maf1 0.51 44.0 3.28e-01 100.0% 67.8%
3721221 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.51 43.0 3.94e-01 96.9% 73.3%
3320752 243.1.1.49 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 0.51 37.0 2.99e-01 81.5% 74.5%
5432 304.111.1.1 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.51 41.0 3.19e-01 95.4% 61.3%