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E6

Euk-Vir

Enhydra_lutris_papillomavirus_1

E6__YP_009021863__Enhydra_lutris_papillomavirus_1__1472717

Identity

Accession:
YP_009021863 ↗
Protein ID:
E6
Kingdom:
euk

Quality

92.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Lambdapapillomavirus› Enhydra_lutris_papillomavirus_1

TaxID: 1472717

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-58
PDB
Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 34.7 2.90e-08 65.4% 30.9%
D2 high residues 67-135
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.75 63.0 6.15e-01 91.3% 88.2%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.67 54.0 5.14e-01 88.4% 75.6%
5kc8A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 38.0 2.66e-01 72.5% 83.1%
2luyA01 3.30.60.210 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain 0.53 37.0 3.96e-01 75.4% 98.2%
5m3nA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 43.0 3.87e-01 92.8% 92.8%
1kptA00 3.30.430.10 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Killer Toxin P4, subunit A 0.51 40.0 3.63e-01 91.3% 80.0%
2k5iA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 31.0 3.05e-01 81.2% 52.6%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.51 35.0 3.49e-01 73.9% 96.1%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.51 39.0 3.86e-01 82.6% 88.9%
2napA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.51 36.0 2.63e-01 79.7% 43.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1734555 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.82 76.0 7.15e-01 100.0% 87.7%
4802727 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.81 72.0 7.23e-01 95.7% 97.1%
185478 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.77 65.0 6.69e-01 89.9% 100.0%
4802726 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.72 58.0 5.98e-01 87.0% 96.9%
3036062 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.68 57.0 5.55e-01 92.8% 88.2%
185477 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.65 51.0 5.21e-01 100.0% 86.6%
3259718 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 38.0 3.34e-01 71.0% 38.1%
5052404 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 48.0 4.40e-01 89.9% 70.0%
4071453 213.1.1.72 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.54 44.0 3.21e-01 97.1% 77.7%
3844839 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.49e-01 82.6% 97.3%
3539459 386.1.1.3 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF 0.52 26.0 2.96e-01 73.9% 60.0%