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E6

Euk-Vir

Canis_familiaris_papillomavirus_16

E6__YP_009126906__Canis_familiaris_papillomavirus_16__1619253

Identity

Accession:: YP_009126906 ↗
Protein ID:: E6
Kingdom:: euk

Quality

89.4 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Chipapillomavirus› Canis_familiaris_papillomavirus_16

TaxID: 1619253

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-58

PDB

Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00518.23 best	E6	29.9	8.80e-07	65.4%	30.9%

D2 high residues 66-129

PDB

Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00518.23 best	E6	39.3	1.10e-09	100.0%	56.4%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2m3lA00	3.30.240.40	Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein	0.79	65.0	6.12e-01	89.1%	75.0%
1kgqA02	2.160.10.10	Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins	0.59	43.0	3.21e-01	78.1%	41.8%
3d9rB00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.56	39.0	3.22e-01	75.0%	82.0%
2napA03	3.40.228.10	Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2	0.53	41.0	2.89e-01	90.6%	65.1%
3en8A01	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.52	39.0	3.37e-01	84.4%	86.6%
4kc9A02	1.20.120.1750	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.52	38.0	2.70e-01	79.7%	75.1%
4orlA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	37.0	3.28e-01	84.4%	88.2%
3f40A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	37.0	3.29e-01	85.9%	83.8%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4802727	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.90	85.0	8.25e-01	100.0%	91.4%
1734555	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.87	80.0	7.31e-01	100.0%	79.0%
185478	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.76	63.0	6.27e-01	92.2%	87.7%
4802726	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.75	58.0	5.88e-01	82.8%	84.4%
3036062	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.66	55.0	5.22e-01	92.2%	77.6%
5015075	221.12.1.0 ↗	a+b two layers › beta-Grasp	0.58	44.0	4.54e-01	85.9%	100.0%
4017803	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.58	43.0	3.92e-01	85.9%	83.2%
3960172	243.1.1.18 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2	0.57	42.0	3.55e-01	81.2%	89.0%
3679413	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.55	42.0	3.15e-01	85.9%	61.7%
3536326	1073.1.1.0 ↗	alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU)	0.53	39.0	3.56e-01	81.2%	94.4%
3721221	211.1.1.1 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase	0.52	46.0	4.10e-01	100.0%	73.3%
3604734	301.1.1.1 ↗	a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae	0.52	43.0	3.48e-01	95.3%	83.7%