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E6

Euk-Vir

Rattus_norvegicus_papillomavirus_3

E6__YP_009182324__Rattus_norvegicus_papillomavirus_3__1756445

Identity

Accession:
YP_009182324 ↗
Protein ID:
E6
Kingdom:
euk

Quality

96.8 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Iotapapillomavirus› Rattus_norvegicus_papillomavirus_3

TaxID: 1756445

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 34.9 2.60e-08 65.4% 30.9%
D2 high residues 63-127
PDB
Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 48.3 1.70e-12 100.0% 59.1%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.90 75.0 7.03e-01 87.7% 75.0%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.81 64.0 5.90e-01 84.6% 67.1%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.33e-01 84.6% 89.6%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.36e-01 83.1% 87.5%
2napA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.52 40.0 2.88e-01 90.8% 98.7%
2juoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 39.0 3.65e-01 87.7% 85.4%
1zud400 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 38.0 3.84e-01 89.2% 84.8%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 2.88e-01 75.4% 82.0%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.26e-01 84.6% 83.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1734555 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.97 91.0 8.27e-01 98.5% 79.0%
4802727 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.95 91.0 8.81e-01 100.0% 92.9%
185478 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.88 71.0 7.12e-01 86.2% 87.7%
4802726 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.84 66.0 6.65e-01 83.1% 84.4%
3036062 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.77 64.0 6.09e-01 90.8% 77.6%
3994982 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.55 37.0 4.08e-01 75.4% 92.0%
5065972 242.2.1.2 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.55 41.0 3.97e-01 81.5% 97.3%
3782920 376.1.1.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.51 36.0 3.01e-01 78.5% 89.6%