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E6

Euk-Vir

Cervus_papillomavirus_2

E6__YP_009252391__Cervus_papillomavirus_2__1434070

Identity

Accession:
YP_009252391 ↗
Protein ID:
E6
Kingdom:
euk

Quality

84.7 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Epsilonpapillomavirus› Cervus_papillomavirus_2

TaxID: 1434070

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 27.0 7.10e-06 94.9% 33.6%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.88 77.0 6.19e-01 100.0% 52.6%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.87 76.0 5.92e-01 100.0% 47.6%
3mwmA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.60 38.0 3.46e-01 76.9% 48.1%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 44.0 3.92e-01 89.7% 71.6%
4fbdA01 3.30.2310.50 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 0.57 45.0 3.41e-01 100.0% 53.5%
3cr8C02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 46.0 2.99e-01 94.9% 58.1%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.56 37.0 2.41e-01 74.4% 13.1%
3e59B02 3.30.60.140 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 45.0 4.55e-01 89.7% 92.1%
3l86A00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.56 44.0 2.83e-01 94.9% 94.7%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 2.97e-01 79.5% 95.4%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 2.73e-01 89.7% 58.8%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.50 38.0 2.90e-01 82.1% 47.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185477 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 1.00 94.0 7.59e-01 100.0% 58.2%
4802726 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.96 87.0 7.26e-01 100.0% 60.9%
1734555 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.93 83.0 6.44e-01 100.0% 48.1%
185478 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.91 80.0 6.77e-01 100.0% 61.5%
3036062 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.91 80.0 6.39e-01 100.0% 51.3%
4802727 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.89 78.0 6.42e-01 100.0% 55.7%
3233807 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 49.0 4.07e-01 100.0% 42.9%
4450939 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.57 43.0 2.78e-01 94.9% 90.0%
3164257 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.56 39.0 2.37e-01 71.8% 42.1%
3462716 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.55 38.0 4.20e-01 74.4% 90.0%
4001675 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.54 41.0 3.63e-01 97.4% 55.0%
3396475 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 45.0 3.66e-01 100.0% 71.2%
4092544 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.53 35.0 2.75e-01 71.8% 44.0%
5001086 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.53 38.0 2.47e-01 79.5% 31.3%
4623982 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.52 40.0 2.53e-01 92.3% 91.9%
3947868 2484.1.1.87 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C 0.52 40.0 2.66e-01 87.2% 20.0%
4509560 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.51 36.0 2.26e-01 79.5% 64.3%
4825021 4.1.1.294 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_head 0.51 38.0 3.72e-01 79.5% 80.0%
4050184 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.51 39.0 2.48e-01 92.3% 88.3%
3731014 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.51 39.0 2.32e-01 82.1% 23.9%
D2 high residues 62-132
PDB
Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 55.7 8.60e-15 95.8% 60.9%