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E6

Euk-Vir

Eidolon_helvum_papillomavirus_3

E6__YP_009345098__Eidolon_helvum_papillomavirus_3__1335477

Identity

Accession:
YP_009345098 ↗
Protein ID:
E6
Kingdom:
euk

Quality

93.4 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Psipapillomavirus› Eidolon_helvum_papillomavirus_3

TaxID: 1335477

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-67
PDB
Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 36.5 8.30e-09 69.5% 36.4%
D2 high residues 76-132
PDB
Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.93 85.0 7.61e-01 100.0% 73.7%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.84 73.0 6.40e-01 96.5% 65.9%
1wdvA00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.57 45.0 3.41e-01 91.2% 72.7%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.66e-01 96.5% 83.7%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.55 45.0 3.71e-01 100.0% 79.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.48e-01 87.7% 89.1%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.22e-01 86.0% 84.7%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.54e-01 94.7% 85.7%
1yelA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.53 43.0 3.75e-01 100.0% 88.2%
4bbqA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 36.0 3.43e-01 84.2% 60.0%
3rgaA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.32e-01 100.0% 87.2%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.35e-01 93.0% 85.4%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.12e-01 86.0% 88.6%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 41.0 3.34e-01 96.5% 77.4%
2m1mA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 41.0 3.46e-01 98.2% 77.6%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.03e-01 86.0% 82.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1734555 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.93 86.0 7.52e-01 100.0% 69.1%
185478 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.91 85.0 8.09e-01 100.0% 87.7%
4802727 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.91 84.0 7.73e-01 100.0% 80.0%
4802726 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.82 70.0 6.77e-01 96.5% 84.4%
3036062 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.80 72.0 6.48e-01 98.2% 75.0%
3698353 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 3.25e-01 78.9% 91.2%
3601626 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 3.19e-01 80.7% 80.7%
3219090 243.1.1.47 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5390 0.56 44.0 3.52e-01 89.5% 89.4%
3417387 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.55 44.0 3.74e-01 96.5% 82.9%
1146735 243.1.1.29 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4783 0.55 42.0 3.48e-01 87.7% 89.1%
3960172 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 41.0 3.38e-01 87.7% 90.7%
3431148 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 44.0 3.68e-01 100.0% 78.8%
4021528 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 39.0 3.05e-01 82.5% 87.5%
3725667 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 37.0 3.04e-01 77.2% 90.4%
5015075 221.12.1.0 ↗ a+b two layers › beta-Grasp 0.53 44.0 4.35e-01 96.5% 100.0%
3213524 243.1.1.82 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 0.53 42.0 3.26e-01 96.5% 77.4%
3763621 221.1.1.42 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › GABP-alpha 0.53 43.0 3.89e-01 100.0% 83.3%
3679413 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 41.0 3.07e-01 93.0% 60.0%
3933591 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 42.0 3.32e-01 96.5% 77.8%
3217508 243.1.1.97 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_N 0.51 40.0 3.28e-01 93.0% 91.2%
2605238 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 41.0 3.51e-01 96.5% 95.3%
3957839 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 39.0 3.21e-01 93.0% 77.7%
3612786 243.1.1.100 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26533 0.51 37.0 2.98e-01 84.2% 77.9%
6390 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.51 40.0 3.35e-01 96.5% 89.9%
3950095 243.1.1.11 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LEH 0.51 39.0 3.10e-01 91.2% 70.7%
3217509 243.1.1.46 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 0.50 40.0 3.12e-01 96.5% 81.3%
3731633 102.1.3.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PAP_assoc 0.50 38.0 2.61e-01 80.7% 74.6%