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E6

Euk-Vir

Leptonychotes_weddellii_papillomavirus_3

E6__YP_009465999__Leptonychotes_weddellii_papillomavirus_3__2077304

Identity

Accession:: YP_009465999 ↗
Protein ID:: E6
Kingdom:: euk

Quality

92.9 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Leptonychotes_weddellii_papillomavirus_3

TaxID: 2077304

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-70

PDB

Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00518.23 best	E6	34.0	4.70e-08	67.3%	33.6%

D2 high residues 76-138

PDB

Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00518.23 best	E6	36.4	8.70e-09	100.0%	56.4%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2m3lA00	3.30.240.40	Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein	0.80	67.0	6.25e-01	90.5%	75.0%
2ljxA00	3.30.240.40	Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein	0.72	58.0	5.27e-01	87.3%	67.1%
1au7A01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.64	46.0	4.48e-01	77.8%	88.9%
1q1aA02	3.30.1600.10	Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain'	0.56	42.0	3.62e-01	85.7%	72.1%
5hmpB02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	41.0	4.17e-01	96.8%	87.5%
2dc1A02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.52	37.0	3.23e-01	88.9%	48.5%
2juoA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.51	40.0	3.68e-01	90.5%	86.5%
5suvC00	3.90.470.20	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain	0.51	42.0	3.49e-01	98.4%	61.6%
6vhyC01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.50	36.0	2.34e-01	82.5%	52.0%
4ht4A00	3.30.930.30	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 ›	0.50	39.0	2.90e-01	92.1%	68.0%
4orlA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.50	37.0	3.24e-01	85.7%	88.2%
5vt9B01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.50	40.0	3.89e-01	100.0%	78.1%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4802727	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.91	86.0	8.25e-01	100.0%	90.0%
1734555	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.88	81.0	7.41e-01	100.0%	77.8%
185478	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.78	64.0	6.39e-01	88.9%	87.7%
4802726	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.72	56.0	5.60e-01	84.1%	84.4%
3164830	377.1.1.7 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR	0.69	37.0	4.37e-01	73.0%	80.0%
3036062	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.67	58.0	5.42e-01	93.7%	77.6%
185477	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.66	50.0	4.89e-01	100.0%	74.6%
3601474	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.55	41.0	2.41e-01	82.5%	49.3%
5015075	221.12.1.0 ↗	a+b two layers › beta-Grasp	0.53	40.0	4.06e-01	87.3%	100.0%