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E6

Euk-Vir

Miniopterus_schreibersii_papillomavirus_1

E6__YP_009507272__Miniopterus_schreibersii_papillomavirus_1__1195364

Identity

Accession:
YP_009507272 ↗
Protein ID:
E6
Kingdom:
euk

Quality

95.0 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Dyotaupapillomavirus› Miniopterus_schreibersii_papillomavirus_1

TaxID: 1195364

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 28.1 3.30e-06 67.3% 33.6%
D2 high residues 66-139
PDB
Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 53.1 5.70e-14 93.2% 61.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.89 75.0 7.42e-01 87.8% 88.2%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.82 67.0 6.52e-01 87.8% 79.3%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 33.0 3.72e-01 82.4% 73.7%
4aybA05 4.10.320.40 Few Secondary Structures › Irregular › Dihydrolipoamide Transferase › 0.55 33.0 4.07e-01 75.7% 100.0%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 33.0 3.82e-01 81.1% 84.3%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 37.0 3.78e-01 97.3% 73.2%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 4.03e-01 93.2% 86.3%
2darA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.51 39.0 3.97e-01 83.8% 97.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1734555 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.95 90.0 8.73e-01 100.0% 100.0%
4802727 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.94 84.0 8.63e-01 93.2% 98.6%
185478 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.92 77.0 8.25e-01 89.2% 100.0%
4802726 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.83 66.0 7.02e-01 83.8% 96.9%
3036062 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.82 72.0 7.16e-01 93.2% 90.8%
185477 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.73 57.0 5.95e-01 98.6% 89.6%
3216855 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 41.0 3.60e-01 82.4% 65.8%
3348294 386.1.1.3 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF 0.54 28.0 3.27e-01 71.6% 70.0%
5015075 221.12.1.0 ↗ a+b two layers › beta-Grasp 0.52 36.0 3.87e-01 73.0% 100.0%
3540261 376.1.2.28 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-FCS 0.51 31.0 3.40e-01 82.4% 78.2%
4402387 2485.1.1.16 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ArsC 0.51 40.0 3.49e-01 90.5% 87.2%