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E6

Euk-Vir

Trichechus_manatus_latirostris_papillomavirus_1

E6__YP_164621__Trichechus_manatus_latirostris_papillomavirus_1__2908011

Identity

Accession:
YP_164621 ↗
Protein ID:
E6
Kingdom:
euk

Quality

95.4 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Rhopapillomavirus› Trichechus_manatus_latirostris_papillomavirus_1

TaxID: 2908011

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-60
PDB
Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 36.5 8.20e-09 67.3% 33.6%
D2 high residues 65-135
PDB
Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 46.3 7.30e-12 97.2% 61.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.87 73.0 7.14e-01 90.1% 86.8%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.80 65.0 6.23e-01 87.3% 75.6%
2juoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 46.0 4.30e-01 90.1% 100.0%
3majA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 3.64e-01 70.4% 75.0%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 3.71e-01 83.1% 78.9%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 41.0 4.15e-01 100.0% 89.0%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.31e-01 73.2% 61.7%
2darA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.51 38.0 3.87e-01 83.1% 97.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4802727 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.96 89.0 8.99e-01 97.2% 98.6%
1734555 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.92 86.0 8.22e-01 100.0% 87.7%
185478 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.82 68.0 7.09e-01 93.0% 98.5%
3036062 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.77 67.0 6.55e-01 93.0% 86.8%
4802726 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.77 61.0 6.38e-01 85.9% 95.3%
185477 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.71 54.0 5.55e-01 98.6% 85.1%
3816531 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.58 39.0 3.25e-01 97.2% 38.5%
1546109 101.1.2.162 ↗ alpha arrays › HTH › HTH › winged helix domain › DprA_WH 0.54 34.0 3.56e-01 70.4% 70.3%
397140 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.51 41.0 3.88e-01 91.5% 84.1%
5015075 221.12.1.0 ↗ a+b two layers › beta-Grasp 0.51 36.0 3.84e-01 76.1% 100.0%
3509728 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 36.0 3.92e-01 94.4% 100.0%