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E88
Euk-VirMurid_betaherpesvirus_8
E88__YP_007016485__Murid_betaherpesvirus_8__1261657
Identity
- Accession:
- YP_007016485 ↗
- Protein ID:
- E88
- Kingdom:
- euk
Quality
77.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Muromegalovirus›
Murid_betaherpesvirus_8
TaxID: 1261657
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-169
Domain cluster:
rep: tegument_protein_UL88__YP_002608280__Human_herpesvirus_5__10359__D21-114_139-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04529.18 best | Herpes_U59 | 212.6 | 1.30e-62 | 93.4% | 41.1% |
D2
high
residues 172-313
D3
high
residues 330-411
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04529.18 best | Herpes_U59 | 66.0 | 4.80e-18 | 100.0% | 22.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 45.0 | 4.49e-01 | 80.5% | 92.8% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.55 | 42.0 | 3.73e-01 | 82.9% | 66.4% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 42.0 | 4.05e-01 | 90.2% | 90.7% |
| 1zq3P00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 34.0 | 3.62e-01 | 98.8% | 82.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4625543 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.57 | 45.0 | 3.21e-01 | 86.6% | 49.0% |
| 4946621 | 171.1.1.16 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › dsrm | 0.57 | 43.0 | 3.51e-01 | 84.1% | 43.2% |
| 3698083 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.57 | 44.0 | 4.27e-01 | 82.9% | 93.3% |
| 3992442 | 592.7.1.1 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 | 0.56 | 44.0 | 4.40e-01 | 87.8% | 91.8% |
| 3930155 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 3.82e-01 | 80.5% | 95.5% |
| 4388170 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.56 | 33.0 | 3.69e-01 | 79.3% | 78.3% |
| 3549194 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.56 | 39.0 | 3.61e-01 | 74.4% | 85.5% |
| 4976192 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 42.0 | 3.01e-01 | 82.9% | 50.0% |
| 3800383 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 35.0 | 3.89e-01 | 98.8% | 86.2% |
| 3370605 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 33.0 | 3.30e-01 | 85.4% | 60.0% |
| 4164573 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 43.0 | 3.81e-01 | 86.6% | 80.0% |
| 3610424 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.52 | 36.0 | 3.73e-01 | 72.0% | 95.0% |
| 4611027 | 3090.1.1.0 ↗ | few secondary structure elements › Microplusin › Microplusin › Microplusin | 0.52 | 40.0 | 3.83e-01 | 97.6% | 69.0% |
| 3449095 | 109.4.1.1296 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long, TPR_24 | 0.52 | 43.0 | 2.70e-01 | 90.2% | 32.8% |
| 3608193 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.52 | 41.0 | 3.17e-01 | 90.2% | 81.9% |
| 3407657 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.51 | 33.0 | 3.12e-01 | 98.8% | 53.0% |
| 4378615 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.50 | 32.0 | 3.62e-01 | 98.8% | 94.5% |